Transcription under torsion (Q42627110)

4 November 2017

Transcription under torsion (English)

1 reference

4 November 2017

3

Michelle D Wang

1 reference

4 November 2017

Jie Ma

1

1 reference

PMCID

5657242

4 November 2017

Lu Bai

series ordinal

2

1 reference

PMCID

5657242

4 November 2017

language of work or name

English

0 references

publication date

1 June 2013

1 reference

4 November 2017

1 reference

4 November 2017

340

1 reference

4 November 2017

6140

1 reference

4 November 2017

1580-1583

1 reference

Comparison of Pause Predictions of Two Sequence-Dependent Transcription Models

4 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Linking RNA polymerase backtracking to genome instability in E. coli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Transcription elongation through a chromatin template

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Mechanochemical analysis of DNA gyrase using rotor bead tracking

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

The dynamic response of upstream DNA to transcription-generated torsional stress

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Supercoiling of the DNA template during transcription

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Local DNA topology and gene expression: the case of the leu-500 promoter

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Transcription generates positively and negatively supercoiled domains in the template.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

The functional response of upstream DNA to dynamic supercoiling in vivo

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Histone release during transcription: displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Optical torque wrench: angular trapping, rotation, and torque detection of quartz microparticles.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Single-molecule analysis of DNA uncoiling by a type II topoisomerase.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5657242

Torque measurement at the single-molecule level

16 August 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Synergistic action of RNA polymerases in overcoming the nucleosomal barrier.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

A single-molecule technique to study sequence-dependent transcription pausing

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Laser-induced heating in optical traps

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Torque and dynamics of linking number relaxation in stretched supercoiled DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

The elasticity of a single supercoiled DNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Structural transitions and elasticity from torque measurements on DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Magnetic tweezers measurement of single molecule torque.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Torque spectroscopy of DNA: base-pair stability, boundary effects, backbending, and breathing dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Magnetic tweezers measurements of the nanomechanical stability of DNA against denaturation at various conditions of pH and ionic strength.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

The organization of replication and transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Transport of torsional stress in DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Force and velocity measured for single molecules of RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Optical application and measurement of torque on microparticles of isotropic nonabsorbing material

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Single-molecule study of the DNA denaturation phase transition in the force-torsion space

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1235441

Mechanochemical kinetics of transcription elongation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23812716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sequence-dependent kinetic model for transcription elongation by RNA polymerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23812716

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1235441

1 reference

4 November 2017

0 references

1 reference

4 November 2017

1 reference

PMCID

5657242