Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli (Q28822192)

April 2022 Public Data File from Crossref

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limma

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Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/5059772

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data

16 March 2017

1 reference

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HMDB 3.0--The Human Metabolome Database in 2013

16 March 2017

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16 March 2017

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16 March 2017

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BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

16 March 2017

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BioNumbers--the database of key numbers in molecular and cell biology

16 March 2017

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PubChem: a public information system for analyzing bioactivities of small molecules

16 March 2017

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16 March 2017

1 reference

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16 March 2017

1 reference

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16 March 2017

1 reference

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PRIDE: a public repository of protein and peptide identifications for the proteomics community

16 March 2017

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Summaries of Affymetrix GeneChip probe level data

16 March 2017

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Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

16 March 2017

1 reference

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Trimmomatic: a flexible trimmer for Illumina sequence data

6 April 2017

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7 April 2017

1 reference

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affy--analysis of Affymetrix GeneChip data at the probe level

7 April 2017

1 reference

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Gene Ontology Consortium: going forward

7 April 2017

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HTSeq--a Python framework to work with high-throughput sequencing data

7 April 2017

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

7 April 2017

1 reference

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Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

7 April 2017

1 reference

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7 April 2017

1 reference

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Microarray data normalization and transformation

7 April 2017

1 reference

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7 April 2017

1 reference

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COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

3 June 2018

1 reference

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RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.

3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

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Batch effect removal methods for microarray gene expression data integration: a survey

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

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3 June 2018

1 reference

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

When one and one gives more than two: challenges and opportunities of integrative omics

3 June 2018

1 reference

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Computational and statistical analysis of protein mass spectrometry data

3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

Functional genomic study of exogenous n-butanol stress in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

Growth rate-dependent global effects on gene expression in bacteria

3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

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3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

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3 June 2018

1 reference

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Integrating 'omic' information: a bridge between genomics and systems biology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

Escherichia coli acid resistance: cAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylase genes

3 June 2018

1 reference

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The Kyoto Encyclopedia of Genes and Genomes—KEGG

3 June 2018

1 reference

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E-CELL: software environment for whole-cell simulation

3 June 2018

1 reference

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Ribosomes as sensors of heat and cold shock in Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5059772

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3 June 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

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21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/27713404

12 December 2020

inferred from PubMed ID database lookup

Editorial: ChemSpider--a tool for Natural Products research

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27713404

12 December 2020

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/27713404

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NCOMMS13090

1 reference

Dimensions Publication ID

3098188

ADS bibcode

2016NatCo...713090K

0 references

1049086693

0 references

3098188

1 reference

1 reference

1 reference