GOMoDo: A GPCRs online modeling and docking webserver (Q28533431)

7

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Francesco Musiani

object named as

Francesco Musiani

6

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Paolo Carloni

object named as

Paolo Carloni

5

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author name string

Massimo Sandal

1

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Tran Phuoc Duy

2

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Matteo Cona

3

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Hoang Zung

Creative Commons Attribution 4.0 International

4

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language of work or name

English

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publication date

2013

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published in

PLOS One

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volume

8

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issue

9

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page(s)

e74092

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copyright license

start time

6 September 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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19 March 2017

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HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

19 March 2017

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SwissDock, a protein-small molecule docking web service based on EADock DSS

19 March 2017

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The structural basis for agonist and partial agonist action on a β(1)-adrenergic receptor

19 March 2017

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Structure of the Human Dopamine D3 Receptor in Complex with a D2/D3 Selective Antagonist

19 March 2017

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Insights into the binding of Phenyltiocarbamide (PTC) agonist to its target human TAS2R38 bitter receptor

19 March 2017

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Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin

19 March 2017

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AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

19 March 2017

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The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist

19 March 2017

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High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor

19 March 2017

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Convergent algorithms for protein structural alignment

19 March 2017

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How many drug targets are there?

19 March 2017

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MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm

19 March 2017

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PatchDock and SymmDock: servers for rigid and symmetric docking

19 March 2017

1 reference

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Protein structure prediction servers at University College London

19 March 2017

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Protein homology detection by HMM-HMM comparison

19 March 2017

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PRODRG: a tool for high-throughput crystallography of protein-ligand complexes

19 March 2017

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VADAR: a web server for quantitative evaluation of protein structure quality

19 March 2017

1 reference

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HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

19 March 2017

1 reference

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Comparative protein structure modeling of genes and genomes

19 March 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

19 March 2017

1 reference

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19 March 2017

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HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets

19 March 2017

1 reference

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A semiempirical free energy force field with charge-based desolvation

7 April 2017

1 reference

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Statistical potential for assessment and prediction of protein structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

The HADDOCK web server for data-driven biomolecular docking

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Coarse-grained/molecular mechanics of the TAS2R38 bitter taste receptor: experimentally-validated detailed structural prediction of agonist binding

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Homology model-assisted elucidation of binding sites in GPCRs.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Methods for sequence-structure alignment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Ligand discovery from a dopamine D3 receptor homology model and crystal structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

GPCRRD: G protein-coupled receptor spatial restraint database for 3D structure modeling and function annotation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Computational molecular biology approaches to ligand-target interactions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Comparative sequence and structural analyses of G-protein-coupled receptor crystal structures and implications for molecular models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Fast and accurate automatic structure prediction with HHpred.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Fpocket: an open source platform for ligand pocket detection.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

The assessment of methods for protein structure prediction.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Ligand specificity of odorant receptors.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Evaluating the usefulness of protein structure models for molecular replacement.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Statistical potentials for fold assessment.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3772745

New vistas in GPCR 3D structure prediction.

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074092

Molecular Modelling of G Protein-Coupled Receptors Through the Web.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074092

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074092

10.1371/JOURNAL.PONE.0074092

21 January 2018

Identifiers

DOI

1 reference

1750477

ADS bibcode

2013PLoSO...874092S

0 references

1750477

1 reference

1 reference

1 reference