Coordinated evolution of the hepatitis C virus (Q27486431)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18621679%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Coordinated evolution of the hepatitis C virus (English)

1 reference

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10 January 2020

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1 reference

1

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10 January 2020

author name string

Z Dimitrova

2

1 reference

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10 January 2020

R J Mitchell

3

1 reference

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10 January 2020

J Lara

4

1 reference

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10 January 2020

Y Khudyakov

5

1 reference

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10 January 2020

language of work or name

English

0 references

publication date

9 July 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18621679%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

10 January 2020

published in

1 reference

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10 January 2020

volume

105

1 reference

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10 January 2020

issue

28

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10 January 2020

page(s)

9685-9690

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Alanine Scanning of the Hepatitis C Virus Core Protein Reveals Numerous Residues Essential for Production of Infectious Virus

10 January 2020

cites work

1 reference

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The C Terminus of Hepatitis C Virus NS4A Encodes an Electrostatic Switch That Regulates NS5A Hyperphosphorylation and Viral Replication

20 March 2017

1 reference

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Epidemiology of hepatitis C virus infection

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Compensatory Mutations in E1, p7, NS2, and NS3 Enhance Yields of Cell Culture-Infectious Intergenotypic Chimeric Hepatitis C Virus

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Evidence for Positive Epistasis in HIV-1

20 March 2017

1 reference

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Efficient Behavior of Small-World Networks

20 March 2017

1 reference

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Long-term evolution of the hypervariable region of hepatitis C virus in a common-source-infected cohort.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

The N-terminal region of hepatitis C virus-encoded NS5A is important for NS4A-dependent phosphorylation

20 March 2017

1 reference

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Both NS3 and NS4A are required for proteolytic processing of hepatitis C virus nonstructural proteins

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Phosphorylation of hepatitis C virus-encoded nonstructural protein NS5A

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Emergence of Scaling in Random Networks

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Collective dynamics of 'small-world' networks

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Specificity and stability in topology of protein networks

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

HyPhy: hypothesis testing using phylogenies

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Error and attack tolerance of complex networks

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Adaptive immune responses in acute and chronic hepatitis C virus infection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Mutational patterns and correlated amino acid substitutions in the HIV-1 protease after virological failure to nelfinavir- and lopinavir/ritonavir-based treatments.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

A model of Internet topology using k-shell decomposition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Deterministic, compensatory mutational events in the capsid of foot-and-mouth disease virus in response to the introduction of mutations found in viruses from persistent infections

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

The rate of compensatory mutation in the DNA bacteriophage phiX174

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Solving the protein sequence metric problem

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

The contribution of epistasis to the architecture of fitness in an RNA virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Epistasis and its relationship to canalization in the RNA virus phi 6.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Hepatitis C virus ultrastructure and morphogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Hypervariable region 1 of hepatitis C virus: immunological decoy or biologically relevant domain?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Evolution of the hypervariable region of hepatitis C virus

29 September 2017

1 reference

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Natural history of hepatitis C.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

AAindex: amino acid index database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Weighting in sequence space: a comparison of methods in terms of generalized sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

Error thresholds and the constraints to RNA virus evolution

29 September 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0801774105

Using information theory to search for co-evolving residues in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0801774105

A Set of Measures of Centrality Based on Betweenness

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0801774105

Detecting rich-club ordering in complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0801774105

Phylogenies and the Comparative Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0801774105

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474538

A method for detecting positive selection at single amino acid sites

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18621679

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0801774105

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18621679%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18621679%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference