A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting (Q27334977)

26 June 2017

A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting (English)

1 reference

26 June 2017

Florian Mueller

2

0 references

Xavier Darzacq

Xavier Darzacq

11

0 references

Volker Bäcker

Volker Bäcker

9

0 references

Annick Lesne

Annick Lesne

4

0 references

Edouard Bertrand

Edouard Bertrand

14

0 references

Christophe Zimmer

12

Christophe Zimmer

1 reference

26 June 2017

Katjana Tantale

1

1 reference

26 June 2017

Alja Kozulic-Pirher

3

1 reference

26 June 2017

Jean-Marc Victor

5

1 reference

26 June 2017

Marie-Cécile Robert

6

1 reference

26 June 2017

Serena Capozi

7

1 reference

26 June 2017

Racha Chouaib

8

1 reference

26 June 2017

Julio Mateos-Langerak

10

1 reference

26 June 2017

Eugenia Basyuk

13

1 reference

26 June 2017

language of work or name

English

0 references

publication date

27 July 2016

1 reference

26 June 2017

Nature Communications

1 reference

26 June 2017

7

1 reference

26 June 2017

12248

1 reference

Creative Commons Attribution 4.0 International

26 June 2017

start time

27 July 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 March 2017

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Nature, nurture, or chance: stochastic gene expression and its consequences

21 March 2017

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Identification of host proteins required for HIV infection through a functional genomic screen

21 March 2017

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Stochastic mRNA synthesis in mammalian cells

21 March 2017

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Transcriptional pulsing of a developmental gene

21 March 2017

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21 March 2017

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Activator-independent functions of the yeast mediator sin4 complex in preinitiation complex formation and transcription reinitiation

21 March 2017

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Control of gene expression through regulation of the TATA-binding protein

21 March 2017

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The Mediator complex and transcription regulation

21 March 2017

1 reference

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

21 March 2017

1 reference

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A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA

21 March 2017

1 reference

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Isolation of coactivators associated with the TATA-binding protein that mediate transcriptional activation

21 March 2017

1 reference

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Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication

21 March 2017

1 reference

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Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

7 April 2017

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Localization of ASH1 mRNA particles in living yeast

7 April 2017

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MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system

7 April 2017

1 reference

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Characterization of the influence of mediator complex in HIV-1 transcription

29 September 2017

1 reference

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Mechanism of transcriptional bursting in bacteria

29 September 2017

1 reference

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Transcription factors modulate c-Fos transcriptional bursts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons

29 September 2017

1 reference

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Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

29 September 2017

1 reference

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More pieces to the puzzle: recent structural insights into class II transcription initiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Stochastic fate selection in HIV-infected patients

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Structural insights into transcription initiation by RNA polymerase II.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Control of transcriptional elongation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Live-cell visualization of pre-mRNA splicing with single-molecule sensitivity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Seeing is believing: visualizing transcriptional dynamics in single cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Genetic selection for context-dependent stochastic phenotypes: Sp1 and TATA mutations increase phenotypic noise in HIV-1 gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells

29 September 2017

1 reference

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An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Transcription-dependent dynamic supercoiling is a short-range genomic force

29 September 2017

1 reference

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How to stop: the mysterious links among RNA polymerase II occupancy 3' of genes, mRNA 3' processing and termination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

A structural perspective on Mediator function

29 September 2017

1 reference

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Real-time imaging of cotranscriptional splicing reveals a kinetic model that reduces noise: implications for alternative splicing regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

A transgenic mouse for in vivo detection of endogenous labeled mRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Chromatin interaction of TATA-binding protein is dynamically regulated in human cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Variability in gene expression underlies incomplete penetrance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

The basal initiation machinery: beyond the general transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Using fluorescent proteins to study mRNA trafficking in living cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

The transcriptional cycle of HIV-1 in real-time and live cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

In vivo dynamics of RNA polymerase II transcription.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Phenotypic consequences of promoter-mediated transcriptional noise

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

The general transcription machinery and general cofactors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

The human immunodeficiency virus type 1 promoter contains a CATA box instead of a TATA box for optimal transcription and replication.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Single mRNA molecules demonstrate probabilistic movement in living mammalian cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

A thermodynamic analysis of the sequence-specific binding of RNA by bacteriophage MS2 coat protein.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Transcription reinitiation rate: a special role for the TATA box.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Localization of HIV-1 RNA in mammalian nuclei

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Chromatin structure and RNA polymerase II connection: implications for transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Post-replicative nonribosomal transcription units in D. melanogaster embryos

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Replication-competent noninduced proviruses in the latent reservoir increase barrier to HIV-1 cure.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

T7 RNA polymerase studied by force measurements varying cofactor concentration.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Morphology of transcription units in Drosophila melanogaster.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila

2 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS12248

Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS12248

FISH-quant: automatic counting of transcripts in 3D FISH images

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS12248

Functional steps in transcription initiation and reinitiation from the major late promoter in a HeLa nuclear extract.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4974459

A transcription reinitiation intermediate that is stabilized by activator

27 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS12248

Non-nucleolar transcription complexes of rat liver as revealed by spreading isolated nuclei

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27461529

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single-cell gene expression profiling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27461529

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS12248

1 reference

Dimensions Publication ID

26 June 2017

0 references

1022512355

0 references

OpenCitations bibliographic resource ID

3679334

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference