Short linear motifs - ex nihilo evolution of protein regulation (Q26863643)

Cell Communication and Signaling

language of work or name

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21 November 2015

4 references

20 June 2019

30 October 2020

16 July 2021

4 references

20 June 2019

30 October 2020

16 July 2021

13

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page(s)

43

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Creative Commons Attribution 4.0 International

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Europe PubMed Central

20 June 2019

Europe PubMed Central

30 October 2020

https://scigraph.springernature.com/pub.10.1186/s12964-015-0120-z

Europe PubMed Central

16 July 2021

0 references

0 references

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The Molecular Mechanism of Substrate Engagement and Immunosuppressant Inhibition of Calcineurin

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Superbinder SH2 domains act as antagonists of cell signaling

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Balanced interactions of calcineurin with AKAP79 regulate Ca2+–calcineurin–NFAT signaling

21 March 2017

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Molecular basis of purine-rich RNA recognition by the human SR-like protein Tra2-β1

21 March 2017

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An overlapping kinase and phosphatase docking site regulates activity of the retinoblastoma protein

21 March 2017

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Evolution of an insect-specific GROUCHO-interaction motif in the ENGRAILED selector protein

21 March 2017

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Structure of the Calcineurin-NFAT Complex: Defining a T Cell Activation Switch Using Solution NMR and Crystal Coordinates

21 March 2017

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Structure of calcineurin in complex with PVIVIT peptide: portrait of a low-affinity signalling interaction

21 March 2017

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Structure of a Fbw7-Skp1-cyclin E complex: multisite-phosphorylated substrate recognition by SCF ubiquitin ligases

21 March 2017

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Specificity determinants of recruitment peptides bound to phospho-CDK2/cyclin A

21 March 2017

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Structure of the Tsg101 UEV domain in complex with the PTAP motif of the HIV-1 p6 protein

21 March 2017

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Crystallographic analysis of the specific yet versatile recognition of distinct nuclear localization signals by karyopherin alpha

21 March 2017

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Structural basis for the specific interaction of lysine-containing proline-rich peptides with the N-terminal SH3 domain of c-Crk

21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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Hph1p and Hph2p, novel components of calcineurin-mediated stress responses in Saccharomyces cerevisiae

21 March 2017

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21 March 2017

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Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

21 March 2017

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Cyclin is degraded by the ubiquitin pathway

21 March 2017

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Context-dependent control of alternative splicing by RNA-binding proteins

21 March 2017

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The language of SH2 domain interactions defines phosphotyrosine-mediated signal transduction

21 March 2017

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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

21 March 2017

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Defining the specificity space of the human SRC homology 2 domain

21 March 2017

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RNA-binding proteins: modular design for efficient function

21 March 2017

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Structural basis of protein phosphatase 1 regulation

21 March 2017

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Homologous regions of Fen1 and p21Cip1 compete for binding to the same site on PCNA: a potential mechanism to co-ordinate DNA replication and repair

21 March 2017

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Turnover of protein phosphorylation evolving under stabilizing selection

21 March 2017

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The eukaryotic linear motif resource ELM: 10 years and counting

21 March 2017

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Phosphorylation at conserved carboxyl-terminal hydrophobic motif regulates the catalytic and regulatory domains of protein kinase C

21 March 2017

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From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome

21 March 2017

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7 April 2017

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Identification of functional elements and regulatory circuits by Drosophila modENCODE

7 April 2017

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Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution

7 April 2017

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Turning a hobby into a job: how duplicated genes find new functions

7 April 2017

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Mechanisms of specificity in protein phosphorylation

7 April 2017

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The evolution of transcriptional regulation in eukaryotes

7 April 2017

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Intrinsically unstructured proteins

7 April 2017

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DNA recognition by Cys2His2 zinc finger proteins

7 April 2017

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Reading protein modifications with interaction domains

7 April 2017

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SH3 interactome conserves general function over specific form.

7 April 2017

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Network evolution: rewiring and signatures of conservation in signaling

10 May 2017

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The Structure of an NDR/LATS Kinase-Mob Complex Reveals a Novel Kinase-Coactivator System and Substrate Docking Mechanism

10 May 2017

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Intrinsically disordered proteins in cellular signalling and regulation.

28 September 2017

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Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences

28 September 2017

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Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells

28 September 2017

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Interaction analysis through proteomic phage display.

28 September 2017

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Multiple mechanisms determine the order of APC/C substrate degradation in mitosis

28 September 2017

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Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

28 September 2017

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A million peptide motifs for the molecular biologist

28 September 2017

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The calcineurin signaling network evolves via conserved kinase-phosphatase modules that transcend substrate identity

28 September 2017

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Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

28 September 2017

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The grammar of transcriptional regulation

28 September 2017

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A compendium of RNA-binding motifs for decoding gene regulation.

28 September 2017

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Working together: combinatorial regulation by microRNAs

28 September 2017

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Disorder-function relationships for the cell cycle regulatory proteins p21 and p27.

28 September 2017

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Intrinsically disordered proteins: a 10-year recap

28 September 2017

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ncDNA and drift drive binding site accumulation

28 September 2017

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Conservation of caspase substrates across metazoans suggests hierarchical importance of signaling pathways over specific targets and cleavage site motifs in apoptosis

28 September 2017

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Plasticity of PDZ domains in ligand recognition and signaling.

28 September 2017

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Motif switches: decision-making in cell regulation

28 September 2017

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Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution

28 September 2017

1 reference

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Tight coevolution of proliferating cell nuclear antigen (PCNA)-partner interaction networks in fungi leads to interspecies network incompatibility

28 September 2017

1 reference

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Structural basis for protein phosphatase 1 regulation and specificity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

The relationship between proteome size, structural disorder and organism complexity

28 September 2017

1 reference

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Attributes of short linear motifs.

28 September 2017

1 reference

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Spatial exclusivity combined with positive and negative selection of phosphorylation motifs is the basis for context-dependent mitotic signaling

28 September 2017

1 reference

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Unstructural biology coming of age.

28 September 2017

1 reference

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Extensive DNA-binding specificity divergence of a conserved transcription regulator

28 September 2017

1 reference

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Evolving specificity from variability for protein interaction domains

28 September 2017

1 reference

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How viruses hijack cell regulation

28 September 2017

1 reference

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WD40 proteins propel cellular networks.

28 September 2017

1 reference

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Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs

28 September 2017

1 reference

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Cell signaling in space and time: where proteins come together and when they're apart

28 September 2017

1 reference

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The expanding universe of p53 targets

28 September 2017

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A specificity map for the PDZ domain family

28 September 2017

1 reference

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Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages

28 September 2017

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Contextual specificity in peptide-mediated protein interactions

28 September 2017

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Genetically destined potentials for N-linked glycosylation of influenza virus hemagglutinin.

28 September 2017

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CDK inhibitors: cell cycle regulators and beyond

28 September 2017

1 reference

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Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites

28 September 2017

1 reference

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PDZ domain binding selectivity is optimized across the mouse proteome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

CDC25 phosphatases in cancer cells: key players? Good targets?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Local structural disorder imparts plasticity on linear motifs.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Specificity and evolvability in eukaryotic protein interaction networks

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Slm1 and slm2 are novel substrates of the calcineurin phosphatase required for heat stress-induced endocytosis of the yeast uracil permease.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Linear motifs: evolutionary interaction switches.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Exceptional disfavor for proline at the P + 1 position among AGC and CAMK kinases establishes reciprocal specificity between them and the proline-directed kinases.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Structure, function and evolution of multidomain proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

A conserved protein interaction network involving the yeast MAP kinases Fus3 and Kss1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

HIV-1 Vpu sequesters beta-transducin repeat-containing protein (betaTrCP) in the cytoplasm and provokes the accumulation of beta-catenin and other SCFbetaTrCP substrates.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

The Structure and Function of Proline Recognition Domains

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Calcineurin-dependent regulation of Crz1p nuclear export requires Msn5p and a conserved calcineurin docking site

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

The role of proteolysis in cell cycle progression in Schizosaccharomyces pombe

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Nucleotides flanking a conserved TAAT core dictate the DNA binding specificity of three murine homeodomain proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

The ABBA motif binds APC/C activators and is shared by APC/C substrates and regulators

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Ancestral resurrection reveals evolutionary mechanisms of kinase plasticity

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

31 May 2018

Don't make me mad, Bub!

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Evolutionary expansion and specialization of the PDZ domains

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

A conserved docking site modulates substrate affinity for calcineurin, signaling output, and in vivo function

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Cyclin a-CDK phosphorylation regulates MDM2 protein interactions

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Analysis of the BiP gene and identification of an ER retention signal in Schizosaccharomyces pombe

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

Into the heart of darkness: large-scale clustering of human non-coding DNA.

31 May 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Mapping N-glycosylation sites across seven evolutionarily distant species reveals a divergent substrate proteome despite a common core machinery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

The vertebrate mitotic checkpoint protein BUBR1 is an unusual pseudokinase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Structural delineation of the calcineurin-NFAT interaction and its parallels to PP1 targeting interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

The switches.ELM resource: a compendium of conditional regulatory interaction interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Factors affecting the diversity of DNA replication licensing control in eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

The folding and evolution of multidomain proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Close encounters of the third kind: disordered domains and the interactions of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Evolutionary rate heterogeneity in proteins with long disordered regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

The processivity of multiubiquitination by the APC determines the order of substrate degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Targeting of calcineurin to an NFAT-like docking site is required for the calcium-dependent activation of the background K+ channel, TRESK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12964-015-0120-Z

Is the high virulence of HIV-1 an unfortunate coincidence of primate lentiviral evolution?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

How perfect can protein interactomes be?

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654906

A Heterotrimeric PCNA in the Hyperthermophilic Archaeon Sulfolobus solfataricus

28 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/26589632

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA Binding Specificity of the CCAAT-binding Factor CBF/NF-Y

1 reference

https://pubmed.ncbi.nlm.nih.gov/26589632

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular Recognition of Transcriptional Repressor Motifs by the WD Domain of the Groucho/TLE Corepressor

1 reference

https://pubmed.ncbi.nlm.nih.gov/26589632

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12964-015-0120-Z

1 reference

Dimensions Publication ID

3078058

1048100813

0 references

3078058

1 reference

1 reference

1 reference