Proto-genes and de novo gene birth (Q22122160)

6 February 2023

Anne-Ruxandra Carvunis

series ordinal

1

object named as

Anne-Ruxandra Carvunis

author given names

Anne-Ruxandra

author last names

Carvunis

1 reference

6 February 2023

Muhammed A Yildirim

5

Muhammed A.

Yildirim

1 reference

6 February 2023

Thomas Rolland

2

Thomas

Rolland

1 reference

6 February 2023

Nicolas Thierry-Mieg

14

Nicolas

Thierry-Mieg

1 reference

6 February 2023

12

Jonathan S Weissman

Jonathan S.

Weissman

1 reference

6 February 2023

16

Marc Vidal

Marc

Vidal

1 reference

6 February 2023

8

César A Hidalgo

César A.

Hidalgo

1 reference

6 February 2023

15

Michael E.

Cusick

Michael E Cusick

1 reference

6 February 2023

4

Michael A.

Calderwood

Michael A Calderwood

1 reference

6 February 2023

6

Nicolas

Simonis

Nicolas Simonis

1 reference

6 February 2023

7

Benoit

Charloteaux

Benoit Charloteaux

1 reference

6 February 2023

10

Balaji

Santhanam

Balaji Santhanam

1 reference

6 February 2023

Ilan Wapinski

3

Ilan

Wapinski

1 reference

6 February 2023

Justin Barbette

series ordinal

9

author given names

Justin

author last names

Barbette

1 reference

6 February 2023

Gloria A Brar

series ordinal

11

author given names

Gloria A.

author last names

Brar

1 reference

De novo origin of human protein-coding genes

6 February 2023

language of work or name

English

0 references

publication date

19 July 2012

0 references

published in

Nature

0 references

volume

487

0 references

issue

7407

0 references

page(s)

370-4

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Darwinian alchemy: Human genes from noncoding DNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

De novo origination of a new protein-coding gene in Saccharomyces cerevisiae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

The transcriptional landscape of the yeast genome defined by RNA sequencing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

The conversion of 3' UTRs into coding regions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

The relationship of protein conservation and sequence length

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

The evolutionary origin of orphan genes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

High-resolution view of the yeast meiotic program revealed by ribosome profiling

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

19 March 2017

Evolution and tinkering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

More than just orphans: are taxonomically-restricted genes important in evolution?

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Putatively noncoding transcripts show extensive association with ribosomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Protein homeostasis and the phenotypic manifestation of genetic diversity: principles and mechanisms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Young proteins experience more variable selection pressures than old proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Origins, evolution, and phenotypic impact of new genes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Composition bias and the origin of ORFan genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Codon usage is associated with the evolutionary age of genes in metazoan genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

The complete DNA sequence of yeast chromosome III

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Revisiting the Saccharomyces cerevisiae predicted ORFeome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Identifying and Quantifying Orphan Protein Sequences in Fungi

27 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11184

A single determinant dominates the rate of yeast protein evolution

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11184

The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11184

Highly expressed genes in yeast evolve slowly.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3401362

Very low gene duplication rate in the yeast genome

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22722833

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE11184

1 reference

50054

release_lcmyul5qtfe4pgp2yrcsan5vxy

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/lcmyul5qtfe4pgp2yrcsan5vxy

mapped directly with Wikidata item

24 November 2022

based on heuristic

50054

1 reference

1 reference

1 reference