Chimeric RNase H-competent oligonucleotides directed to the HIV-1 Rev response element (Q24682407)

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31 December 2019

title

Chimeric RNase H-competent oligonucleotides directed to the HIV-1 Rev response element (English)

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31 December 2019

1

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31 December 2019

author name string

Anthony D Saleh

series ordinal

2

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31 December 2019

Maggie P Wear

series ordinal

3

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31 December 2019

Paul S Miller

series ordinal

4

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31 December 2019

language of work or name

English

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publication date

2 June 2007

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Bioorganic & Medicinal Chemistry

31 December 2019

published in

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31 December 2019

volume

15

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31 December 2019

issue

16

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31 December 2019

page(s)

5386-5395

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Mfold web server for nucleic acid folding and hybridization prediction

31 December 2019

cites work

1 reference

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7 April 2017

THE HIV-1 REV PROTEIN

1 reference

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NMR studies of DNA single strands and DNA:RNA hybrids with and without 1-propynylation at C5 of oligopyrimidines

7 April 2017

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The solution structure of a DNA*RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications

7 April 2017

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RNA−Ligand Interactions: Affinity and Specificity of Aminoglycoside Dimers and Acridine Conjugates to the HIV-1 Rev Response Element

7 April 2017

1 reference

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Allosteric inhibition of the HIV-1 Rev/RRE interaction by a 3'-methylphosphonate modified antisense oligo-2'-O-methylribonucleotide

7 April 2017

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Structural requirements at the catalytic site of the heteroduplex substrate for human RNase H1 catalysis

28 September 2017

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3'-methylphosphonate-modified oligo-2'-O-methylribonucleotides and their Tat peptide conjugates: uptake and stability in mouse fibroblasts in culture

28 September 2017

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The use of cell-penetrating peptides as a tool for gene regulation.

28 September 2017

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Cell penetrating peptides in drug delivery

28 September 2017

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Transduction peptides: from technology to physiology

28 September 2017

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Peptide-mediated cellular delivery of antisense oligonucleotides and their analogues

28 September 2017

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Peptide-assisted delivery of steric-blocking antisense oligomers.

28 September 2017

1 reference

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Rev inhibition strongly affects intracellular distribution of human immunodeficiency virus type 1 RNAs.

28 September 2017

1 reference

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Potent and specific inhibition of human immunodeficiency virus type 1 replication by RNA interference

28 September 2017

1 reference

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Flexible and frozen sugar-modified nucleic acids--modulation of biological activity through furanose ring dynamics in the antisense strand

28 September 2017

1 reference

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Molecular requirements for degradation of a modified sense RNA strand by Escherichia coli ribonuclease H1

28 September 2017

1 reference

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Design of antisense oligonucleotides stabilized by locked nucleic acids

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Long-range cooperativity in molecular recognition of RNA by oligodeoxynucleotides with multiple C5-(1-propynyl) pyrimidines

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

A critical survey of the structure-function of the antisense oligo/RNA heteroduplex as substrate for RNase H.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Triplex formation by psoralen-conjugated chimeric oligonucleoside methylphosphonates

28 September 2017

1 reference

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Properties of cloned and expressed human RNase H1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Selecting optimal oligonucleotide composition for maximal antisense effect following streptolysin O-mediated delivery into human leukaemia cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Cleavage of single strand RNA adjacent to RNA-DNA duplex regions by Escherichia coli RNase H1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Antisense gene inhibition by C-5-substituted deoxyuridine-containing oligodeoxynucleotides

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Inhibition of Rev activity and human immunodeficiency virus type 1 replication by antisense oligodeoxynucleotide phosphorothioate analogs directed against the Rev-responsive element

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Inhibition of human immunodeficiency virus type-1 env expression by C-5 propyne oligonucleotides specific for Rev-response element stem-loop V.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

RNase H is responsible for the non-specific inhibition of in vitro translation by 2'-O-alkyl chimeric oligonucleotides: high affinity or selectivity, a dilemma to design antisense oligomers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

An assessment of the antisense properties of RNase H-competent and steric-blocking oligomers

28 September 2017

1 reference

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A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich "bubble" located within the rev-responsive region of viral mRNAs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Increased specificity for antisense oligodeoxynucleotide targeting of RNA cleavage by RNase H using chimeric methylphosphonodiester/phosphodiester structures

28 September 2017

1 reference

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Nuclease resistance and antisense activity of modified oligonucleotides targeted to Ha-ras

28 September 2017

1 reference

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What affects the effect of 2'-alkoxy modifications? 1. Stabilization effect of 2'-methoxy substitutions in uniformly modified DNA oligonucleotides

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Antisense gene inhibition by oligonucleotides containing C-5 propyne pyrimidines

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Absorbance melting curves of RNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Enhanced RNase H activity with methylphosphonodiester/phosphodiester chimeric antisense oligodeoxynucleotides

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Evaluation of 2'-modified oligonucleotides containing 2'-deoxy gaps as antisense inhibitors of gene expression.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1987364

Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H

28 November 2018

1 reference

12 December 2020

Assay for evaluating ribonuclease H-mediated degradation of RNA-antisense oligonucleotide duplexes

1 reference

12 December 2020

A dynamic in vivo view of the HIV-I Rev-RRE interaction

1 reference

12 December 2020

Chimeric oligodeoxynucleotide analogs: chemical synthesis, purification, and molecular and cellular biology protocols

1 reference

12 December 2020

10.1016/J.BMC.2007.05.066

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31 December 2019

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31 December 2019

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