The solution structure of a DNA*RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications (Q27641180)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12736318%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

title

The solution structure of a DNA*RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications (English)

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3 November 2019

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3

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3 November 2019

author name string

Jeffrey I Gyi

1

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3 November 2019

Daquan Gao

2

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3 November 2019

John O Trent

4

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3 November 2019

Tom Brown

5

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3 November 2019

Andrew N Lane

6

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3 November 2019

language of work or name

English

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publication date

1 May 2003

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3 November 2019

published in

Nucleic Acids Research

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3 November 2019

volume

31

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3 November 2019

issue

10

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3 November 2019

page(s)

2683-2693

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NMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes

3 November 2019

cites work

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Solution conformation of an RNA--DNA hybrid duplex containing a pyrimidine RNA strand and a purine DNA strand

20 March 2017

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Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA

20 March 2017

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Crystal structure of a DNA.RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC)

20 March 2017

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Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes

20 March 2017

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20 March 2017

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The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

20 March 2017

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PTP1B antisense oligonucleotide lowers PTP1B protein, normalizes blood glucose, and improves insulin sensitivity in diabetic mice

7 April 2017

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Oligonucleotide-based strategies to reduce gene expression.

29 September 2017

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Chemical modification of the third strand: differential effects on purine and pyrimidine triple helix formation

29 September 2017

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Long-range cooperativity in molecular recognition of RNA by oligodeoxynucleotides with multiple C5-(1-propynyl) pyrimidines

29 September 2017

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Impact of CpG methylation on structure, dynamics and solvation of cAMP DNA responsive element

29 September 2017

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Structural properties of DNA:RNA duplexes containing 2'-O-methyl and 2'-S-methyl substitutions: a molecular dynamics investigation

29 September 2017

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A cytosine analog that confers enhanced potency to antisense oligonucleotides

29 September 2017

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Triplex formation by oligonucleotides containing 5-(1-propynyl)-2'-deoxyuridine: decreased magnesium dependence and improved intracellular gene targeting

29 September 2017

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Potent and selective inhibition of gene expression by an antisense heptanucleotide

29 September 2017

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The orientation and dynamics of the C2'-OH and hydration of RNA and DNA.RNA hybrids

29 September 2017

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Comparison of the electrophoretic and hydrodynamic properties of DNA and RNA oligonucleotide duplexes

29 September 2017

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Hydration of the RNA duplex r(CGCAAAUUUGCG)2 determined by NMR.

29 September 2017

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Hydrodynamic properties of a double-helical model for DNA.

29 September 2017

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The determination of the conformational properties of nucleic acids in solution from NMR data

29 September 2017

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Electrophoretic and hydrodynamic properties of duplex ribonucleic acid molecules transcribed in vitro: evidence that A-tracts do not generate curvature in RNA.

29 September 2017

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C5-(1-propynyl)-2'-deoxy-pyrimidines enhance mismatch penalties of DNA:RNA duplex formation

2 June 2018

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Relative thermodynamic stability of DNA, RNA, and DNA:RNA hybrid duplexes: relationship with base composition and structure.

27 November 2018

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Structure and stability of the consecutive stereoregulated chiral phosphorothioate DNA duplex

27 November 2018

1 reference

12 December 2020

Thermodynamic and structural properties of pentamer DNA.DNA, RNA.RNA, and DNA.RNA duplexes of identical sequence

1 reference

12 December 2020

NMR assignments and solution conformation of the DNA.RNA hybrid duplex d(GTGAACTT).r(AAGUUCAC)

1 reference

12 December 2020

Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2'-hydroxyl effects

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12 December 2020

Comparison of the thermodynamic stabilities and solution conformations of DNA.RNA hybrids containing purine-rich and pyrimidine-rich strands with DNA and RNA duplexes

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKG356

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12736318%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

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3 November 2019

PubMed publication ID

12736318

1 reference