Insights into RNA biology from an atlas of mammalian mRNA-binding proteins (Q24337152)

Benedikt M Beckmann

5

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David T Humphreys

David T Humphreys

8

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Bernd Fischer

Bernd Fischer

2

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Norman Davey

Norman E Davey

7

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Lars M Steinmetz

Lars M Steinmetz

10

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Jeroen Krijgsveld

Jeroen Krijgsveld

11

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Matthias Hentze

Matthias W Hentze

12

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author name string

Alfredo Castello

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Katrin Eichelbaum

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Rastislav Horos

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Claudia Strein

Isolation and RNA-binding analysis of NAD+ -isocitrate dehydrogenases from Kluyveromyces lactis and Schizosaccharomyces pombe

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publication date

8 June 2012

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language of work or name

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149

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issue

6

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page(s)

1393-406

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cites work

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7 January 2021

Structural relationship between an iron-regulated RNA-binding protein (IRE-BP) and aconitase: functional implications

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Crosslinking proteins to nucleic acids by ultraviolet laser irradiation

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Enzymes as RNA-binding proteins: a role for (di)nucleotide-binding domains?

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7 January 2021

FASTKD2 nonsense mutation in an infantile mitochondrial encephalomyopathy associated with cytochrome c oxidase deficiency

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7 January 2021

The two faces of PTP1B in cancer

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7 January 2021

She2p Is a Novel RNA Binding Protein with a Basic Helical Hairpin Motif

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7 January 2021

The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA

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1 reference

7 January 2021

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

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7 January 2021

Two to tango: regulation of Mammalian iron metabolism

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7 January 2021

RNA-binding proteins and post-transcriptional gene regulation

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7 January 2021

Spliceosomal immunophilins

1 reference

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7 January 2021

The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

1 reference

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7 January 2021

Searching DNA via a "Monkey Bar" mechanism: the significance of disordered tails

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7 January 2021

RAP--a putative RNA-binding domain

1 reference

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7 January 2021

WD40 proteins propel cellular networks.

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7 January 2021

The REM phase of gene regulation

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7 January 2021

RNA-binding proteins in human genetic disease

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7 January 2021

A nuclear RNA-binding cyclophilin in human T cells

1 reference

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7 January 2021

Intra-RNA and RNA-protein cross-linking techniques in Escherichia coli ribosomes

1 reference

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7 January 2021

Lack of catalytic activity of a murine mRNA cytoplasmic serine hydroxymethyltransferase splice variant: evidence against alternative splicing as a regulatory mechanism

1 reference

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7 January 2021

RNA-protein interactions of the 3' untranslated regions of myosin heavy chain transcripts

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7 January 2021

Multifunctionality of the linker histones: an emerging role for protein-protein interactions

1 reference

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7 January 2021

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

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7 January 2021

A high-quality catalog of the Drosophila melanogaster proteome

1 reference

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7 January 2021

Photo-leucine and photo-methionine allow identification of protein-protein interactions in living cells

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7 January 2021

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

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7 January 2021

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Protein structure prediction on the Web: a case study using the Phyre server

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Intrinsically unstructured proteins and their functions

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7 January 2021

RNA-binding proteins: modular design for efficient function

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains

1 reference

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7 January 2021

Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction

1 reference

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7 January 2021

Intrinsically disordered regions as affinity tuners in protein-DNA interactions

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Unbiased RNA-protein interaction screen by quantitative proteomics.

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https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

AUH, a gene encoding an AU-specific RNA binding protein with intrinsic enoyl-CoA hydratase activity

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Glyceraldehyde-3-phosphate dehydrogenase selectively binds AU-rich RNA in the NAD(+)-binding region (Rossmann fold).

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7 January 2021

Lactate dehydrogenase is an AU-rich element-binding protein that directly interacts with AUF1

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https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Fragile X mental retardation protein (FMRP) binds specifically to the brain cytoplasmic RNAs BC1/BC200 via a novel RNA-binding motif

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Characterization of 3'hExo, a 3' exonuclease specifically interacting with the 3' end of histone mRNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Cyclophilin A is required for CXCR4-mediated nuclear export of heterogeneous nuclear ribonucleoprotein A2, activation and nuclear translocation of ERK1/2, and chemotactic cell migration

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

A versatile nanotrap for biochemical and functional studies with fluorescent fusion proteins

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7 January 2021

Semi-supervised LC/MS alignment for differential proteomics

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Homology between IRE-BP, a regulatory RNA-binding protein, aconitase, and isopropylmalate isomerase

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Yeast mitochondrial NAD(+)-dependent isocitrate dehydrogenase is an RNA-binding protein

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Comparative genomics and evolution of proteins involved in RNA metabolism

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7 January 2021

Analogs of methionyl-tRNA synthetase substrates containing photolabile groups

1 reference

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7 January 2021

Ultraviolet light-induced crosslinking of mRNA to proteins

1 reference

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7 January 2021

Reactome: a knowledgebase of biological pathways

1 reference

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7 January 2021

The role of structural disorder in the function of RNA and protein chaperones

1 reference

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7 January 2021

Shuttling SR proteins: more than splicing factors

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

CLIP identifies Nova-regulated RNA networks in the brain

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Cyclophilin A interacts with domain II of hepatitis C virus NS5A and stimulates RNA binding in an isomerase-dependent manner

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Characterization of Heterogeneous Nuclear RNA-Protein Complexes In Vivo with Monoclonal Antibodies

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Molecular cloning, structure and expression of a novel nuclear RNA-binding cyclophilin-like gene (PPIL4) from human fetal brain

1 reference

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7 January 2021

Regulation of urokinase receptor expression by phosphoglycerate kinase

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7 January 2021

Differential expression analysis for sequence count data

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7 January 2021

PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae

1 reference

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7 January 2021

A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes.

1 reference

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7 January 2021

Intrinsic disorder and functional proteomics

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7 January 2021

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

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7 January 2021

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

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https://api.crossref.org/works/10.1016%2FJ.CELL.2012.04.031

7 January 2021

RNA Regulation in Neurologic Disease and Cancer

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7 January 2021