Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins (Q24308775)

KH RNA binding domain containing, signal transduction associated 3

1 reference

Serine and arginine rich splicing factor 1

1 reference

Y-box binding protein 1

1 reference

ELAV like RNA binding protein 1

1 reference

RNA binding motif protein 4

1 reference

RNA binding

1 reference

Esther T Chan

3

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Lourdes Peña Castillo

object named as

Lourdes Peña Castillo

4

0 references

Quaid D Morris

object named as

Quaid Morris

8

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Benjamin J. Blencowe

7

object named as

Benjamin J Blencowe

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author name string

Debashish Ray

1

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Hilal Kazan

2

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Sidharth Chaudhry

5

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Shaheynoor Talukder

6

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Timothy R Hughes

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

9

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language of work or name

English

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publication date

July 2009

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published in

Nature Biotechnology

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volume

27

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page(s)

667-70

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issue

7

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cites work

1 reference

CLIP: a method for identifying protein-RNA interaction sites in living cells

20 April 2017

1 reference

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

20 April 2017

1 reference

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

20 April 2017

1 reference

Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1

20 April 2017

1 reference

The RNA-binding SAM domain of Smaug defines a new family of post-transcriptional regulators

20 April 2017

1 reference

The SR protein SRp38 represses splicing in M phase cells

20 April 2017

1 reference

A novel splicing regulator shares a nuclear import pathway with SR proteins

20 April 2017

1 reference

Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains

20 April 2017

1 reference

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

20 April 2017

1 reference

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

20 April 2017

1 reference

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

20 April 2017

1 reference

MEME: discovering and analyzing DNA and protein sequence motifs

20 April 2017

1 reference

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

20 April 2017

1 reference

RNA-binding proteins and post-transcriptional gene regulation

20 April 2017

1 reference

Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

21 January 2018

1 reference

Sequence-specific binding of single-stranded RNA: is there a code for recognition?

21 January 2018

1 reference

Design of compact, universal DNA microarrays for protein binding microarray experiments

21 January 2018

1 reference

Identification of HuR as a protein implicated in AUUUA-mediated mRNA decay

21 January 2018

1 reference

Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs

21 January 2018

1 reference

Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p.

21 January 2018

1 reference

The RNA-binding protein HuR regulates the expression of cyclooxygenase-2.

21 January 2018

1 reference

mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

21 January 2018

1 reference

U1-snRNP-A protein selects a ten nucleotide consensus sequence from a degenerate RNA pool presented in various structural contexts

21 January 2018

1 reference

STAR family RNA-binding protein ASD-2 regulates developmental switching of mutually exclusive alternative splicing in vivo

21 January 2018

1 reference

The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4.

21 January 2018

1 reference

YB-1 autoregulates translation of its own mRNA at or prior to the step of 40S ribosomal subunit joining

21 January 2018

1 reference

RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.

21 January 2018

1 reference

Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF

21 January 2018

1 reference

Structure of PTB bound to RNA: specific binding and implications for splicing regulation

21 January 2018

1 reference

Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors

21 January 2018

1 reference

RNAshapes: an integrated RNA analysis package based on abstract shapes.

21 January 2018

1 reference

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

21 January 2018

1 reference

Clustering by passing messages between data points

21 January 2018

1 reference

The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19561594

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RNA-binding specificity of Y-box protein 1.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19561594

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Multiple RRMs contribute to RNA binding specificity and affinity for polypyrimidine tract binding protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19561594

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT.1550

1 reference

Consolidated OpenCitations Corpus – April 2017

Dimensions Publication ID

1121120

1016306836

0 references

Fatcat ID

release_jk6a4pbbb5gatfal3k7zhl7jlu

0 references

1121120

1 reference

Consolidated OpenCitations Corpus – April 2017

Consolidated OpenCitations Corpus – April 2017

1 reference