Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities (Q29301030)

9 April 2017

6

Martha L Bulyk

1 reference

9 April 2017

author name string

Michael F Berger

1

1 reference

9 April 2017

Anthony A Philippakis

2

1 reference

9 April 2017

Aaron M Qureshi

3

1 reference

9 April 2017

Fangxue S He

4

1 reference

9 April 2017

Preston W Estep

5

1 reference

9 April 2017

publication date

24 September 2006

1 reference

9 April 2017

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9 April 2017

volume

24

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9 April 2017

page(s)

1429-1435

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9 April 2017

issue

11

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Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells

9 April 2017

cites work

1 reference

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Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein

9 April 2017

1 reference

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Transcriptional regulatory code of a eukaryotic genome

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

DNA binding site of the growth factor-inducible protein Zif268

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins

9 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Extensive low-affinity transcriptional interactions in the yeast genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Defining the sequence-recognition profile of DNA-binding molecules

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Designing transcription factor architectures for drug discovery.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Quantitative high-throughput analysis of transcription factor binding specificities.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Pentaprobe: a comprehensive sequence for the one-step detection of DNA-binding activities

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Proteome-scale purification of human proteins from bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

The yeast centromere CDEI/Cpf1 complex: differences between in vitro binding and in vivo function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

The Caenorhabditis elegans NK-2 class homeoprotein CEH-22 is involved in combinatorial activation of gene expression in pharyngeal muscle.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4419707

MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16998473

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16998473

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT1246

2 references

9 April 2017

Dimensions Publication ID

419856

1046227460

0 references

419856

1 reference

1 reference

1 reference