High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome (Q21266665)

19 August 2022

Francisco A Cubillos

6

Francisco A

Cubillos

1 reference

19 August 2022

Conrad A. Nieduszynski

object named as

Conrad A Nieduszynski

15

Conrad A

Nieduszynski

1 reference

19 August 2022

Gianni Liti

1

Gianni

Liti

1 reference

19 August 2022

Edward J Louis

14

Edward J

Louis

1 reference

19 August 2022

Cheuk C Siow

11

Cheuk C

Siow

1 reference

19 August 2022

Anders Bergström

5

Anders

Bergström

1 reference

19 August 2022

13

Alan M

Moses

Alan M Moses

1 reference

19 August 2022

2

Alex N Nguyen

Ba

Alex N Nguyen Ba

1 reference

19 August 2022

Martin Blythe

3

Martin

Blythe

1 reference

19 August 2022

Carolin A Müller

4

Carolin A

Müller

1 reference

19 August 2022

Felix Dafhnis-Calas

7

Felix

Dafhnis-Calas

1 reference

19 August 2022

Shima Khoshraftar

8

Shima

Khoshraftar

1 reference

19 August 2022

Sunir Malla

9

Sunir

Malla

1 reference

19 August 2022

Neel Mehta

10

Neel

Mehta

1 reference

describes a project that uses

19 August 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

BMC Genomics

0 references

volume

14

0 references

issue

1

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page(s)

69

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MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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OriDB, the DNA replication origin database updated and extended

19 March 2017

1 reference

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Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

19 March 2017

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Trait variation in yeast is defined by population history

19 March 2017

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Removing noise from pyrosequenced amplicons

19 March 2017

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BFAST: an alignment tool for large scale genome resequencing

19 March 2017

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Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production

19 March 2017

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Population genomics of domestic and wild yeasts

19 March 2017

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Automated generation of heuristics for biological sequence comparison

19 March 2017

1 reference

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Versatile and open software for comparing large genomes

19 March 2017

1 reference

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The generic genome browser: a building block for a model organism system database

19 March 2017

1 reference

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

19 March 2017

1 reference

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

19 March 2017

1 reference

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

19 March 2017

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

19 March 2017

1 reference

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Tandem repeats finder: a program to analyze DNA sequences

19 March 2017

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

19 March 2017

1 reference

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19 March 2017

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Rapid expansion and functional divergence of subtelomeric gene families in yeasts.

19 March 2017

1 reference

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Transcriptional regulatory code of a eukaryotic genome

19 March 2017

1 reference

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Pyrosequencing sheds light on DNA sequencing

19 March 2017

1 reference

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Remarkably ancient balanced polymorphisms in a multi-locus gene network

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Mauve: multiple alignment of conserved genomic sequence with rearrangements

19 March 2017

1 reference

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Genome-scale approaches to resolving incongruence in molecular phylogenies

7 April 2017

1 reference

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Saccharomyces Genome Database: the genomics resource of budding yeast

7 April 2017

1 reference

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The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

7 April 2017

1 reference

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GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 April 2017

1 reference

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From sequence to function: Insights from natural variation in budding yeasts

7 April 2017

1 reference

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Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly

12 September 2017

1 reference

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Using the Generic Synteny Browser (GBrowse_syn)

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Yeast evolutionary genomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Genetic identification of new biological species Saccharomyces arboricolus Wang et Bai.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Accurate determination of microbial diversity from 454 pyrosequencing data

12 September 2017

1 reference

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Recent advances in the biological production of mannitol

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Chemogenetic fingerprinting by analysis of cellular growth dynamics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Saccharomyces arboricolus sp. nov., a yeast species from tree bark

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Allopatric divergence, secondary contact, and genetic isolation in wild yeast populations.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Sequence diversity, reproductive isolation and species concepts in Saccharomyces

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Population genetics of the wild yeast Saccharomyces paradoxus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Yeast chromosomes have been significantly reshaped during their evolutionary history

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Conservation of replication timing reveals global and local regulation of replication origin activity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Genome-wide identification of replication origins in yeast by comparative genomics.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599269

Genomic exploration of the hemiascomycetous yeasts: 5. Saccharomyces bayanus var. uvarum

30 May 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-69

Evolution of gene order in the genomes of two related yeast species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-69

Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-69

The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-69

Chromosomal evolution in Saccharomyces

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-69

21 January 2018

Identifiers

DOI

10.1186/1471-2164-14-69

1 reference

1815069

release_uepzzpi7rbagtlv7inoy7ulnm4

0 references

Fatcat ID

0 references

1815069

1 reference

1 reference

1 reference