Comparative Multiplexed Interactomics of SARS-CoV-2 and Homologous Coronavirus Nonstructural Proteins Identifies Unique and Shared Host-Cell Dependencies (Q103827469)

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scientific article published on 02 December 2020

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English	Comparative Multiplexed Interactomics of SARS-CoV-2 and Homologous Coronavirus Nonstructural Proteins Identifies Unique and Shared Host-Cell Dependencies	scientific article published on 02 December 2020

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scholarly article

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33263384%20AND%20SRC:MED&resulttype=core&format=json

4 December 2020

Comparative Multiplexed Interactomics of SARS-CoV-2 and Homologous Coronavirus Nonstructural Proteins Identifies Unique and Shared Host-Cell Dependencies (English)

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4 December 2020

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Non-structural protein 2 [SARS CoV-2]

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Non-structural protein 4 [SARS-CoV-2]

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4

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4 December 2020

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Jonathan P Davies

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4 December 2020

Katherine M Almasy

2

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4 December 2020

Eli F McDonald

3

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4 December 2020

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2 December 2020

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4 December 2020

ACS Infectious Diseases

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4 December 2020

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7724760/fullTextXML

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Coronaviruses: an overview of their replication and pathogenesis.

1 reference

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Severe acute respiratory syndrome coronavirus nonstructural protein 2 interacts with a host protein complex involved in mitochondrial biogenesis and intracellular signaling

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Protein-Protein Interactions in Virus-Host Systems.

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Localization and Membrane Topology of Coronavirus Nonstructural Protein 4: Involvement of the Early Secretory Pathway in Replication

1 reference

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Murine Hepatitis Virus Nonstructural Protein 4 Regulates Virus-Induced Membrane Modifications and Replication Complex Function

1 reference

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Expression and Cleavage of Middle East Respiratory Syndrome Coronavirus nsp3-4 Polyprotein Induce the Formation of Double-Membrane Vesicles That Mimic Those Associated with Coronaviral RNA Replication.

1 reference

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24 December 2020

Membrane topology of murine coronavirus replicase nonstructural protein 3.

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A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

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Stomatin-like protein 2 binds cardiolipin and regulates mitochondrial biogenesis and function

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The transcription factor FoxK participates with Nup98 to regulate antiviral gene expression

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Expression profile of nuclear receptors upon Epstein -- Barr virus induced B cell transformation.

1 reference

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PLD3 and PLD4 are single-stranded acid exonucleases that regulate endosomal nucleic-acid sensing

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Activation of the adenovirus major late promoter by transcription factors MAZ and Sp1.

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Gene signatures associated with adaptive humoral immunity following seasonal influenza A/H1N1 vaccination.

1 reference

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Kin17 facilitates multiple double-strand break repair pathways that govern B cell class switching

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

The ubiquitin ligase RNF5 regulates antiviral responses by mediating degradation of the adaptor protein MITA

1 reference

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Interaction mapping of endoplasmic reticulum ubiquitin ligases identifies modulators of innate immune signalling

1 reference

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24 December 2020

VKORC1 pharmacogenomics summary

1 reference

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Induction of Herpud1 expression by ER stress is regulated by Nrf1

1 reference

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BAG2 structure, function and involvement in disease

1 reference

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Structural characterization of the Get4/Get5 complex and its interaction with Get3

1 reference

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RFT1 Protein Affects Glycosylphosphatidylinositol (GPI) Anchor Glycosylation

1 reference

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Human RFT1 deficiency leads to a disorder of N-linked glycosylation

1 reference

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Endoplasmic reticulum calcium pumps and cancer cell differentiation

1 reference

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GPR177 promotes gastric cancer proliferation by suppressing endoplasmic reticulum stress-induced cell death

1 reference

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Competitive Inhibition of the Endoplasmic Reticulum Signal Peptidase by Non-cleavable Mutant Preprotein Cargos

1 reference

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Host defense against viral infection involves interferon mediated down-regulation of sterol biosynthesis

1 reference

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Nef induces multiple genes involved in cholesterol synthesis and uptake in human immunodeficiency virus type 1-infected T cells

1 reference

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Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics

1 reference

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Targeting 7-Dehydrocholesterol Reductase Integrates Cholesterol Metabolism and IRF3 Activation to Eliminate Infection

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Characterization of MRFAP1 turnover and interactions downstream of the NEDD8 pathway

1 reference

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Sequestration of microRNA-mediated target repression by the Ago2-associated RNA-binding protein FAM120A

1 reference

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IL13 Receptor α2 Signaling Requires a Scaffold Protein, FAM120A, to Activate the FAK and PI3K Pathways in Colon Cancer Metastasis.

1 reference

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The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell proliferation and targets the transcription factor Hbp1 for degradation.

1 reference

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24 December 2020

Split-TurboID enables contact-dependent proximity labeling in cells

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Contact-ID, a tool for profiling organelle contact sites, reveals regulatory proteins of mitochondrial-associated membrane formation

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

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Non-canonical function of IRE1α determines mitochondria-associated endoplasmic reticulum composition to control calcium transfer and bioenergetics

1 reference

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24 December 2020

Interaction of stomatin with hepatitis C virus RNA polymerase stabilizes the viral RNA replicase complexes on detergent-resistant membranes

1 reference

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24 December 2020

Identification of prohibitin as a Chikungunya virus receptor protein

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Prohibitin plays a critical role in Enterovirus 71 neuropathogenesis

1 reference

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FBXO45-MYCBP2 regulates mitotic cell fate by targeting FBXW7 for degradation

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Structure of V-ATPase from the mammalian brain

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

E3 ubiquitin ligase RNF170 inhibits innate immune responses by targeting and degrading TLR3 in murine cells

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

RNF170 protein, an endoplasmic reticulum membrane ubiquitin ligase, mediates inositol 1,4,5-trisphosphate receptor ubiquitination and degradation

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Inositol trisphosphate and calcium signalling

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

IP3 receptor isoforms differently regulate ER-mitochondrial contacts and local calcium transfer

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Mitochondria-associated membranes (MAMs) and inflammation.

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

NS5A Promotes Constitutive Degradation of IP3R3 to Counteract Apoptosis Induced by Hepatitis C Virus

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Severe acute respiratory syndrome coronavirus E protein transports calcium ions and activates the NLRP3 inflammasome

1 reference

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24 December 2020

Proteomics of SARS-CoV-2-infected host cells reveals therapy targets

1 reference

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24 December 2020

Thyroglobulin interactome profiling defines altered proteostasis topology associated with thyroid dyshormonogenesis

1 reference

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Single-step inline hydroxyapatite enrichment facilitates identification and quantitation of phosphopeptides from mass-limited proteomes with MudPIT

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS).

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

The PRIDE database and related tools and resources in 2019: improving support for quantification data

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Isolation of endoplasmic reticulum, mitochondria, and mitochondria-associated membrane fractions from transfected cells and from human cytomegalovirus-infected primary fibroblasts.

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724760

24 December 2020

Identifiers

10.1021/ACSINFECDIS.0C00500

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33263384%20AND%20SRC:MED&resulttype=core&format=json

4 December 2020

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Europe PubMed Central

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4 December 2020

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