Wikidata:WikiProject COVID-19/Items

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A list of relevant Wikidata items related to COVID-19.

Main items[edit]

Local Outbreaks[edit]

Ex:

Basic terminology[edit]

A curated list of items related to the basic terminology one must know to understand COVID-19 (Q84263196) is available at Yupik/HackTheCrisis.

Literature[edit]

See this SPARQL query. However, what needs work is:

  • add one of the three relevant topics to article items that don't have it
  • import missing articles

Relevant categories and templates[edit]

Items related to the social impact[edit]

Items related to the economic impact[edit]

Items related to the biology of the SARS-CoV-2 (Q82069695)[edit]

Related taxons[edit]

Linked by parent taxon (P171)[edit]

Some linking issues to be solved (see [1]).

Other Betacoronavirus (Q16532287)[edit]

See Wikidata:WikiProject_COVID-19/Queries#Other_Betacoronavirus_(Q16532287)


Genes, genomes, proteins and pathways[edit]

Genome[edit]

  • Genes:

Proteins[edit]

Note that UniProt has made available a pre-release dataset at ftp://ftp.uniprot.org/pub/databases/uniprot/pre_release/. The identifiers will be active after their end-of-April release. Only then will it be useful to run the bot to fully import the data.

The following shows the maturation hierarchy, i.e., which fragments are cleaved from which precursors (Source: UniProt):

orf1ab polyprotein (Q88174316) --- translated at low frequency by -1 ribosomal frameshift (Ref.: UniProt)
├── Host translation inhibitor nsp1
├── Non-structural protein 2
├── Papain-like proteinase (Q87917581)
├── Non-structural protein 4
├── 3C-like proteinase (Q87917582)
├── Non-structural protein 6
├── Non-structural protein 7
├── Non-structural protein 8
├── Non-structural protein 9
├── NSP10 from SARS CoV-2 (Q87917572)
├── RNA-directed RNA polymerase
├── Helicase
├── Guanine-N7 methyltransferase
├── Uridylate-specific endoribonuclease (Q87917579)
├── 2'-O-methyltransferase (Q87917580)

ORF1a polyprotein (Q88657499) --- no frameshift, high frequency (Ref.: UniProt)
├── Host translation inhibitor nsp1
├── Non-structural protein 2
├── Papain-like proteinase (Q87917581)
├── Non-structural protein 4
├── 3C-like proteinase (Q87917582)
├── Non-structural protein 6
├── Non-structural protein 7
├── Non-structural protein 8
├── Non-structural protein 9
├── NSP10 from SARS CoV-2 (Q87917572)
├── RNA-directed RNA polymerase

spike glycoprotein (Q87917585) 
├── Spike protein S1
├── Spike protein S2
├── Spike protein S3

Viroporin 3a (Q88200603)

envelope protein (Q88655710)

membrane protein (Q88656821)

ORF7a protein (Q88658500)

Protein non-structural 7b (Q88658861)

Non-structural protein 8 (Q88659350)

nucleocapsid protein (Q87917584)

Q88647313

Accessory protein 9b

Uncharacterized protein 14

Protein families[edit]

Pathways[edit]