A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment (Q91324793)

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scientific article published on 22 May 2017

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English	A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment	scientific article published on 22 May 2017

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21 April 2020

A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment (English)

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21 April 2020

Mycobacterium tuberculosis

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Elsje Pienaar

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21 April 2020

Jennifer J Linderman

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21 April 2020

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22 May 2017

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21 April 2020

Current Opinion in Systems Biology

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21 April 2020

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21 April 2020

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21 April 2020

Mycobacterium tuberculosis infection induces il12rb1 splicing to generate a novel IL-12Rbeta1 isoform that enhances DC migration

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Mycobacterium marinum infection of adult zebrafish causes caseating granulomatous tuberculosis and is moderated by adaptive immunity

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Tuberculosis vaccines--rethinking the current paradigm

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Harnessing the heterogeneity of T cell differentiation fate to fine-tune generation of effector and memory T cells

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

The timing of TNF and IFN-gamma signaling affects macrophage activation strategies during Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Systems biology of persistent infection: tuberculosis as a case study

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Multiple mechanisms allow Mycobacterium tuberculosis to continuously inhibit MHC class II-mediated antigen presentation by macrophages

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

An essential role for interferon gamma in resistance to Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

The path of anti-tuberculosis drugs: from blood to lesions to mycobacterial cells

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Application of a stochastic modeling to assess the evolution of tuberculous and non-tuberculous mycobacterial infection in patients treated with tumor necrosis factor inhibitors

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

The spectrum of latent tuberculosis: rethinking the biology and intervention strategies

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Strategies for treating latent multiple-drug resistant tuberculosis: a decision analysis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Phenotypic heterogeneity in mycobacterial stringent response

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

CCR5-deficient mice control Mycobacterium tuberculosis infection despite increased pulmonary lymphocytic infiltration

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Modeling Granulomas in Response to Infection in the Lung

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Cytolytic CD8+ T cells recognizing CFP10 are recruited to the lung after Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Evaluation of standard chemotherapy in the guinea pig model of tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Mass spectrometry imaging of levofloxacin distribution in TB-infected pulmonary lesions by MALDI-MSI and continuous liquid microjunction surface sampling.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Modeling nanoparticle delivery of TB drugs to granulomas

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Susceptibility of mice deficient in CD1D or TAP1 to infection with Mycobacterium tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Two-drug antimicrobial chemotherapy: a mathematical model and experiments with Mycobacterium marinum

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

In vivo depletion of CD11c+ cells delays the CD4+ T cell response to Mycobacterium tuberculosis and exacerbates the outcome of infection.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Tuneable resolution as a systems biology approach for multi-scale, multi-compartment computational models

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

The role of the granuloma in expansion and dissemination of early tuberculous infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Population pharmacokinetics and its role in anti-tuberculosis drug development and optimization of treatment

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

T cell chemotaxis in a simple microfluidic device

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

A metapopulation model of granuloma formation in the lung during infection with mycobacterium tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Intracellular bacillary burden reflects a burst size for Mycobacterium tuberculosis in vivo.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

TNF and IL-10 are major factors in modulation of the phagocytic cell environment in lung and lymph node in tuberculosis: a next-generation two-compartmental model

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Integration of experimental and computational approaches to sprouting angiogenesis.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Expansion and function of Foxp3-expressing T regulatory cells during tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Contribution of CD8+ T cells to control of Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Variability in tuberculosis granuloma T cell responses exists, but a balance of pro- and anti-inflammatory cytokines is associated with sterilization

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Multiscale prediction of patient-specific platelet function under flow

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Differences in reactivation of tuberculosis induced from anti-TNF treatments are based on bioavailability in granulomatous tissue

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Oxygen Modulates the Effectiveness of Granuloma Mediated Host Response to Mycobacterium tuberculosis: A Multiscale Computational Biology Approach

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

The success and failure of BCG - implications for a novel tuberculosis vaccine

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Hybrid models of tumor growth.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

A blood RNA signature for tuberculosis disease risk: a prospective cohort study

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

A multifaceted approach to modeling the immune response in tuberculosis.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Development and function of IL-10 IFN-gamma-secreting CD4(+) T cells.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

In situ study of abundant expression of proinflammatory chemokines and cytokines in pulmonary granulomas that develop in cynomolgus macaques experimentally infected with Mycobacterium tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Aberrant TGF-beta signaling reduces T regulatory cells in ICAM-1-deficient mice, increasing the inflammatory response to Mycobacterium tuberculosis.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Models of the within-host dynamics of persistent mycobacterial infections.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Effect of multiple genetic polymorphisms on antigen presentation and susceptibility to Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Vaccination alters the balance between protective immunity, exhaustion, escape, and death in chronic infections

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

TNF influences chemokine expression of macrophages in vitro and that of CD11b+ cells in vivo during Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Modified vaccinia Ankara-expressing Ag85A, a novel tuberculosis vaccine, is safe in adolescents and children, and induces polyfunctional CD4+ T cells

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

CD4(+) T cells are required for the development of cytotoxic CD8(+) T cells during Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Tumor necrosis factor and chemokine interactions in the formation and maintenance of granulomas in tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Mathematical Model of Oxygen Transport in Tuberculosis Granulomas

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Immunology studies in non-human primate models of tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Systems Pharmacology Approach Toward the Design of Inhaled Formulations of Rifampicin and Isoniazid for Treatment of Tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Treatment of tuberculosis and optimal dosing schedules

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Differential risk of tuberculosis reactivation among anti-TNF therapies is due to drug binding kinetics and permeability

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Multidrug-resistant and extensively drug-resistant tuberculosis: a review of current concepts and future challenges.

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Carbon flux rerouting during Mycobacterium tuberculosis growth arrest

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Natural history of tuberculosis: duration and fatality of untreated pulmonary tuberculosis in HIV negative patients: a systematic review

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

The Small Breathing Amplitude at the Upper Lobes Favors the Attraction of Polymorphonuclear Neutrophils to Mycobacterium tuberculosis Lesions and Helps to Understand the Evolution toward Active Disease in An Individual-Based Model

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

CD4(+) regulatory T cells in a cynomolgus macaque model of Mycobacterium tuberculosis infection

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Tuberculous granulomas are hypoxic in guinea pigs, rabbits, and nonhuman primates

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

New concepts in understanding latent tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Correlates of tuberculosis risk: predictive biomarkers for progression to active tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Population pharmacokinetics of levofloxacin, gatifloxacin, and moxifloxacin in adults with pulmonary tuberculosis

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Peptide length-based prediction of peptide-MHC class II binding

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.COISB.2017.05.014

Identifiers

10.1016/J.COISB.2017.05.014

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30714019%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30714019%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30714019%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

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