Transcriptomic Analysis of mRNA-lncRNA-miRNA Interactions in Hepatocellular Carcinoma (Q91151795)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

title

Transcriptomic Analysis of mRNA-lncRNA-miRNA Interactions in Hepatocellular Carcinoma (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

main subject

hepatocellular carcinoma

1 reference

Xia Tang

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Delong Feng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Min Li

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Jinxue Zhou

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Xiaoyuan Li

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Dachun Zhao

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Bingtao Hao

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Dewei Li

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Keyue Ding

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

publication date

6 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

page(s)

16096

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

20 April 2020

WGCNA

object named as

WGCNA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Recurrently deregulated lncRNAs in hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Unique features of long non-coding RNA biogenesis and function

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Let-7a microRNA suppresses therapeutics-induced cancer cell death by targeting caspase-3.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

MicroRNA-214 downregulation contributes to tumor angiogenesis by inducing secretion of the hepatoma-derived growth factor in human hepatoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Non-coding RNA networks in cancer.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

MicroRNA-125b suppressesed human liver cancer cell proliferation and metastasis by directly targeting oncogene LIN28B2.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

The imprinted H19 lncRNA antagonizes let-7 microRNAs.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Transcriptome sequencing identified hub genes for hepatocellular carcinoma by weighted-gene co-expression analysis.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Quantitative Levels of Hepatitis B Virus DNA and Surface Antigen and the Risk of Hepatocellular Carcinoma in Patients with Hepatitis B Receiving Long-Term Nucleos(t)ide Analogue Therapy

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

HBV DNA Integration: Molecular Mechanisms and Clinical Implications

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

MiRNA expression profiles in the brains of mice infected with scrapie agents 139A, ME7 and S15.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

sRNAtoolbox: an integrated collection of small RNA research tools

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

miRBase: microRNA sequences, targets and gene nomenclature

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

A survey of best practices for RNA-seq data analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Differential expression in RNA-seq: a matter of depth

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Comparison of software packages for detecting differential expression in RNA-seq studies

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

TopHat: discovering splice junctions with RNA-Seq

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

miRWalk2.0: a comprehensive atlas of microRNA-target interactions

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

MicroRNA targets in Drosophila

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

RNAhybrid: microRNA target prediction easy, fast and flexible

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Predicting effective microRNA target sites in mammalian mRNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

WGCNA: an R package for weighted correlation network analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Gene ontology: tool for the unification of biology

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

The landscape of long noncoding RNAs in the human transcriptome

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Long non-coding RNAs: critical players in hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Identification of novel long non-coding RNAs deregulated in hepatocellular carcinoma using RNA-sequencing.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

COSMIC: somatic cancer genetics at high-resolution

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

MEG3 Long Noncoding RNA Contributes to the Epigenetic Regulation of Epithelial-Mesenchymal Transition in Lung Cancer Cell Lines.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

A comprehensive genome-wide analysis of long noncoding RNA expression profile in hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

MiR-199a-3p regulates mTOR and c-Met to influence the doxorubicin sensitivity of human hepatocarcinoma cells

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Decreased levels of microRNA miR-122 in individuals with hepatitis C responding poorly to interferon therapy

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

MicroRNA-423 promotes cell growth and regulates G(1)/S transition by targeting p21Cip1/Waf1 in hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

In hepatocellular carcinoma miR-519d is up-regulated by p53 and DNA hypomethylation and targets CDKN1A/p21, PTEN, AKT3 and TIMP2.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

Long non-coding RNAs as novel targets for therapy in hepatocellular carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41598-019-52559-X

7 January 2021

10.1038/S41598-019-52559-X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31695090%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

1 reference