Current research trends in systems biology (Q58271860)

2

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Seong‐Eui Hong

3

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Taeyong Kim

4

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Hong Ki Song

Collecting and organizing systematic sets of protein data

5

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publication date

January 2008

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published in

Animal Cells and Systems

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volume

12

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page(s)

181-191

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issue

4

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cites work

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Error and attack tolerance of complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Physicochemical modelling of cell signalling pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Structure-based assembly of protein complexes in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Interrogating protein interaction networks through structural biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Structural systems biology: modelling protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Computational discovery of gene modules and regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Ontologies in biology: design, applications and future challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Beyond the data deluge: data integration and bio-ontologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A protein domain-based interactome network for C. elegans early embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

p53-Repressed miRNAs are involved with E2F in a feed-forward loop promoting proliferation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Gene network dynamics controlling keratinocyte migration

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

cPath: open source software for collecting, storing, and querying biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Accessing genetic information with high-density DNA arrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Integration of biological networks and gene expression data using Cytoscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Integrating gene and protein expression data: pattern analysis and profile mining

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Integration of omics data: how well does it work for bacteria?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Global reconstruction of the human metabolic network based on genomic and bibliomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

High-resolution protein-protein docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Protein microarray technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Microarray platforms--comparisons and contrasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

From molecular to modular cell biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A data integration methodology for systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A data integration methodology for systems biology: experimental verification

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Building with a scaffold: emerging strategies for high- to low-level cellular modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Multiple high-throughput analyses monitor the response of E. coli to perturbations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Linking data to models: data regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

The large-scale organization of metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Reactome: a knowledgebase of biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

The model organism as a system: integrating 'omics' data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

ENFIN a network to enhance integrative systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Metabolomics and systems biology: making sense of the soup

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Systems biology: a brief overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Coherent coupling of feedback loops: a design principle of cell signaling networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Transcriptional regulatory networks in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Recurrent design patterns in the feedback regulation of the mammalian signalling network

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

GeneLynx mouse: integrated portal to the mouse genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

The RNA Ontology Consortium: an open invitation to the RNA community

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Gene set enrichment analysis for non-monotone association and multiple experimental categories

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A computational approach for ordering signal transduction pathway components from genomics and proteomics Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

The Edinburgh human metabolic network reconstruction and its functional analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A combined algorithm for genome-wide prediction of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Electron tomography and immunonanogold electron microscopy for investigating intracellular trafficking and secretion in human eosinophils

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Network motifs: simple building blocks of complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

What transmission electron microscopes can visualize now and in the future

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Regulation of yeast oscillatory dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Systematic discovery of new recognition peptides mediating protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A visual approach to proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

MODBASE, a database of annotated comparative protein structure models, and associated resources.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Hierarchical organization of modularity in metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A systems biology perspective on protein structural dynamics and signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Biomedical ontologies: a functional perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

GeneCards 2002: towards a complete, object-oriented, human gene compendium

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

From words to literature in structural proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Genetics. Getting closer to the whole picture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

An overview of cardiac systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Integrating biological databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

DDBJ with new system and face

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Protein microarrays: Promising tools for proteomic research

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

OmicBrowse: a browser of multidimensional omics annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Bringing metabolomics data into the forefront of systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Data merging for integrated microarray and proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

The Systems Biology Research Tool: evolvable open-source software

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Network-based global inference of human disease genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

OmicsViz: Cytoscape plug-in for visualizing omics data across species

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

Finding multiple target optimal intervention in disease-related molecular network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

High-quality binary protein interaction map of the yeast interactome network

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

SynDB: a Synapse protein DataBase based on synapse ontology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172

21 January 2018

Reasoning for results

1 reference

https://api.crossref.org/works/10.1080%2F19768354.2008.9647172