NanoPARE: parallel analysis of RNA 5' ends from low-input RNA (Q57791525)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

NanoPARE: parallel analysis of RNA 5' ends from low-input RNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Max J Kellner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Falko Hofmann

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Michael D Nodine

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

author name string

Alexandra Plotnikova

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

language of work or name

English

0 references

publication date

24 October 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

volume

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

page(s)

1931-1942

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

Failure to detect “cap” structures in mitochondrial DNA-coded poly(A)-containing RNA from HeLa cells

30 April 2020

cites work

1 reference

12 December 2020

The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens

1 reference

12 December 2020

Molecular characterization of the Arabidopsis floral homeotic gene APETALA1

1 reference

12 December 2020

Genetic interactions among floral homeotic genes of Arabidopsis

1 reference

12 December 2020

The war of the whorls: genetic interactions controlling flower development

1 reference

12 December 2020

Expression of the Arabidopsis floral homeotic gene AGAMOUS is restricted to specific cell types late in flower development

1 reference

12 December 2020

Control of Arabidopsis flower and seed development by the homeotic gene APETALA2

1 reference

12 December 2020

Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA.

1 reference

12 December 2020

Processing and degradation of chloroplast mRNA.

1 reference

12 December 2020

Novel features of the XRN-family in Arabidopsis: evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm

1 reference

12 December 2020

Biogenesis of small nucleolar ribonucleoproteins

1 reference

12 December 2020

Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries.

1 reference

12 December 2020

Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

1 reference

12 December 2020

P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction

1 reference

12 December 2020

MicroRNAs: genomics, biogenesis, mechanism, and function

1 reference

12 December 2020

Spatially restricted microRNA directs leaf polarity through ARGONAUTE1.

1 reference

12 December 2020

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

1 reference

12 December 2020

AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

1 reference

12 December 2020

microRNA-directed phasing during trans-acting siRNA biogenesis in plants

1 reference

12 December 2020

Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes

1 reference

12 December 2020

Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

1 reference

12 December 2020

A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis

1 reference

12 December 2020

Novel mechanisms for maturation of chloroplast transfer RNA precursors.

1 reference

12 December 2020

Reverse transcriptase template switching and false alternative transcripts.

1 reference

12 December 2020

Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

1 reference

12 December 2020

Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction.

1 reference

12 December 2020

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

1 reference

12 December 2020

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

1 reference

12 December 2020

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

1 reference

12 December 2020

A link between RNA metabolism and silencing affecting Arabidopsis development.

1 reference

12 December 2020

Stem cell transcriptome profiling via massive-scale mRNA sequencing

1 reference

12 December 2020

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

1 reference

12 December 2020

Eukaryotic snoRNAs: a paradigm for gene expression flexibility.

1 reference

12 December 2020

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

1 reference

12 December 2020

miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana

1 reference

12 December 2020

The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis

1 reference

12 December 2020

Cellular dynamics of tRNAs and their genes

1 reference

12 December 2020

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate.

1 reference

12 December 2020

On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development

1 reference

12 December 2020

MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis

1 reference

12 December 2020

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

1 reference

12 December 2020

A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

1 reference

12 December 2020

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

1 reference

12 December 2020

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

1 reference

12 December 2020

STAR: ultrafast universal RNA-seq aligner

1 reference

12 December 2020

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching

1 reference

12 December 2020

A comprehensive expression analysis of the Arabidopsis MICRORNA165/6 gene family during embryogenesis reveals a conserved role in meristem specification and a non-cell-autonomous function

1 reference

12 December 2020

A protodermal miR394 signal defines a region of stem cell competence in the Arabidopsis shoot meristem

1 reference

12 December 2020

XRN 5'→3' exoribonucleases: structure, mechanisms and functions.

1 reference

12 December 2020

Coordination of flower maturation by a regulatory circuit of three microRNAs

1 reference

12 December 2020

Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes--GMUCT 2.0.

1 reference

12 December 2020

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

1 reference

12 December 2020

Accounting for technical noise in single-cell RNA-seq experiments.

1 reference

12 December 2020

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation

1 reference

12 December 2020

miRBase: annotating high confidence microRNAs using deep sequencing data

1 reference

12 December 2020

Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis

1 reference

12 December 2020

Genomic features and regulatory roles of intermediate-sized non-coding RNAs in Arabidopsis.

1 reference

12 December 2020

Two independent transcription initiation codes overlap on vertebrate core promoters

1 reference

12 December 2020

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

1 reference

12 December 2020

An atlas of active enhancers across human cell types and tissues

1 reference

12 December 2020

Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures

1 reference

12 December 2020

An overview of pre-ribosomal RNA processing in eukaryotes

1 reference

12 December 2020

Spatiotemporal sequestration of miR165/166 by Arabidopsis Argonaute10 promotes shoot apical meristem maintenance

1 reference

12 December 2020

NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites

1 reference

12 December 2020

The expanding world of small RNAs in plants

1 reference

12 December 2020

Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants

1 reference

12 December 2020

Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis.

1 reference

12 December 2020

A cost effective 5΄ selective single cell transcriptome profiling approach with improved UMI design.

1 reference

12 December 2020

Comparative Analysis of Single-Cell RNA Sequencing Methods.

1 reference

12 December 2020

An atlas of human long non-coding RNAs with accurate 5' ends.

1 reference

12 December 2020

Alternative TSSs are co-regulated in single cells in the mouse brain

1 reference

12 December 2020

Correcting nucleotide-specific biases in high-throughput sequencing data

1 reference

12 December 2020

An integrated expression atlas of miRNAs and their promoters in human and mouse.

1 reference

12 December 2020

Light Controls Protein Localization through Phytochrome-Mediated Alternative Promoter Selection.

1 reference

12 December 2020

Pervasive, Coordinated Protein-Level Changes Driven by Transcript Isoform Switching during Meiosis.

1 reference

12 December 2020

Tn5Prime, a Tn5 based 5' capture method for single cell RNA-seq.

1 reference

12 December 2020

Comprehensive comparative analysis of 5'-end RNA-sequencing methods

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.239202.118

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30355603%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference