Current Awareness on Comparative and Functional Genomics (Q56887724)

April 2022 Public Data File from Crossref

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cites work

Whole-genome expression analysis: challenges beyond clustering

1 reference

Back to the future: the human protein index (HPI) and the agenda for post-proteomic biology

21 January 2018

1 reference

Discovering altered genomic expression patterns in heart: transcriptome determination by serial analysis of gene expression

21 January 2018

1 reference

Cardiovascular proteomics: evolution and potential

21 January 2018

1 reference

Duplicate and diverge: the evolution of plant genome microstructure

21 January 2018

1 reference

Genomics and proteomics converge on Helicobacter pylori

21 January 2018

1 reference

Microbial genomes: dealing with diversity

21 January 2018

1 reference

In vivo imaging of gene expression:.

21 January 2018

1 reference

Gene expression studies using microarrays

21 January 2018

1 reference

Advances in sequence analysis

21 January 2018

1 reference

Genome sequences and evolutionary biology, a two-way interaction

21 January 2018

1 reference

Are we ready for pharmacogenomics in heart failure?

21 January 2018

1 reference

Applications of microarray technology in breast cancer research

21 January 2018

1 reference

Genomics and proteomics: the new millennium of drug discovery and development

21 January 2018

1 reference

Transcriptomes, transcription activators and microarrays

21 January 2018

1 reference

Whole-genome analysis: annotations and updates

21 January 2018

1 reference

Perspectives for mass spectrometry and functional proteomics

21 January 2018

1 reference

Antibacterial vaccine design using genomics and proteomics

21 January 2018

1 reference

Post-genomic nematode parasitology

21 January 2018

1 reference

Alternative splicing: increasing diversity in the proteomic world

21 January 2018

1 reference

The biology of kinetoplastid parasites: insights and challenges from genomics and post-genomics

21 January 2018

1 reference

Arrays for protein expression profiling: towards a viable alternative to two-dimensional gel electrophoresis?

21 January 2018

1 reference

Analysis of host responses to microbial infection using gene expression profiling

21 January 2018

1 reference

Use of antibodies for detection of phosphorylated proteins separated by two-dimensional gel electrophoresis

21 January 2018

1 reference

Protein structure similarities.

21 January 2018

1 reference

Clustering and analysis of protein families

21 January 2018

1 reference

Proteomics: a technology-driven and technology-limited discovery science

21 January 2018

1 reference

Pharmacogenetics and pharmacogenomics.

21 January 2018

1 reference

The battle of two genomes: genetics of bacterial host/pathogen interactions in mice

21 January 2018

1 reference

Zebrafish--an emerging genetic model for the study of cytokines and hematopoiesis in the era of functional genomics

21 January 2018

1 reference

Microarrays for microbiologists

21 January 2018

1 reference

Recent developments in computational proteomics.

21 January 2018

1 reference

21 January 2018

The first plant genome

1 reference

Are ethics committee members competent to consult?

21 January 2018

1 reference

Pharmacogenomics: unlocking the human genome for better drug therapy

21 January 2018

1 reference

Spotting the target: microarrays for disease gene discovery

21 January 2018

1 reference

Protein functions and biological contexts.

21 January 2018

1 reference

Comparison of genomic DNA sequences: solved and unsolved problems

21 January 2018

1 reference

Convergent functional genomics: application to bipolar disorder

21 January 2018

1 reference

The human proteomics initiative (HPI).

21 January 2018

1 reference

Bacterial fatty-acid biosynthesis: a genomics-driven target for antibacterial drug discovery

21 January 2018

1 reference

Computational analysis of microarray data

21 January 2018

1 reference

Basic microarray analysis: grouping and feature reduction

21 January 2018

1 reference

Stroke genomics: approaches to identify, validate, and understand ischemic stroke gene expression

21 January 2018

1 reference

The potential of nucleic acid repair in functional genomics

21 January 2018

1 reference

Pharmacogenomics: implications for laboratory medicine

21 January 2018

1 reference

Computational analysis of human disease-associated genes and their protein products

21 January 2018

1 reference

Working in the post-genomic C. elegans world

21 January 2018

1 reference

Parasite genomics: current status and future prospects

21 January 2018

1 reference

Determination of protein function, evolution and interactions by structural genomics.

21 January 2018

1 reference

Helical membrane proteins: diversity of functions in the context of simple architecture

21 January 2018

1 reference

A genomic view of yeast membrane transporters

21 January 2018

1 reference

Challenges and prospects of plant proteomics

21 January 2018

1 reference

Transcriptional gene silencing in plants: targets, inducers and regulators

21 January 2018

1 reference

Completeness in structural genomics.

21 January 2018

1 reference

Pseudomonas for biocontrol of phytopathogens: from functional genomics to commercial exploitation.

21 January 2018

1 reference

Pharmacogenomics: will it change the field of medicine?

21 January 2018

1 reference

Analysis and characterization of the complete genome of tupaia (tree shrew) herpesvirus

21 January 2018

1 reference

Construction of DNA restriction maps based on a simplified experiment.

21 January 2018

1 reference

The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403

21 January 2018

1 reference

Analysis of the constitution of the beer yeast genome by PCR, sequencing and subtelomeric sequence hybridization

21 January 2018

1 reference

The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis

21 January 2018

1 reference

Complete genome sequence of an M1 strain of Streptococcus pyogenes

21 January 2018

1 reference

Directed gap closure in large-scale sequencing projects

21 January 2018

1 reference

The complete human olfactory subgenome

21 January 2018

1 reference

Genomics of Mycobacterium bovis

21 January 2018

1 reference

The DNA sequence of the simian varicella virus genome

21 January 2018

1 reference

Physical mapping with automatic capture of hybridization data.

21 January 2018

1 reference

Uniform integration of genome mapping data using intersection graphs

21 January 2018

1 reference

Whole genome analysis of a wine yeast strain

21 January 2018

1 reference

Gene discovery in Plasmodium chabaudi by genome survey sequencing

21 January 2018

1 reference

Genomics. Annotation of the Drosophila genome

21 January 2018

1 reference

The complete mitochondrial genome of yarrowia lipolytica

21 January 2018

1 reference

Whole genome sequencing of meticillin-resistant Staphylococcus aureus

21 January 2018

1 reference

An enhanced linkage map of the sheep genome comprising more than 1000 loci

21 January 2018

1 reference

Microarray-based survey of repetitive genomic sequences in Vicia spp.

21 January 2018

1 reference

The complete genome of the crenarchaeon Sulfolobus solfataricus P2

21 January 2018

1 reference

Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

21 January 2018

1 reference

Complete sequence of the mitochondrial genome of the tapeworm Hymenolepis diminuta: gene arrangements indicate that Platyhelminths are Eutrochozoans

21 January 2018

1 reference

Flexibility of the genetic code with respect to DNA structure

21 January 2018

1 reference

TreeGeneBrowser: phylogenetic data mining of gene sequences from public databases

21 January 2018

1 reference

Identification of thermophilic species by the amino acid compositions deduced from their genomes

21 January 2018

1 reference

Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea

21 January 2018

1 reference

The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis

21 January 2018

1 reference

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

21 January 2018

1 reference

MAC5: Bayesian inference of phylogenetic trees from DNA sequences incorporating gaps.

21 January 2018

1 reference

Evolution of genome-phenome diversity under environmental stress

21 January 2018

1 reference

Evolutionary Role of Restriction/Modification Systems as Revealed by Comparative Genome Analysis

21 January 2018

1 reference

How many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies

21 January 2018

1 reference

Microbial genes in the human genome: lateral transfer or gene loss?

21 January 2018

1 reference

Evolution of prokaryotic gene order: genome rearrangements in closely related species.

21 January 2018

1 reference

Evidence for recombination in natural populations of dengue virus type 1 based on the analysis of complete genome sequences

21 January 2018

1 reference

Evidence that the Campylobacter fetus sap locus is an ancient genomic constituent with origins before mammals and reptiles diverged

21 January 2018

1 reference

Representational difference analysis reveals genomic differences between Q. robur and Q. suber: implications for the study of genome evolution in the genus Quercus

21 January 2018

1 reference

Comparative genomics of lactococcal phages: insight from the complete genome sequence of Lactococcus lactis phage BK5-T.

21 January 2018

1 reference

Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation

21 January 2018

1 reference

Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.

21 January 2018

1 reference

Complete nucleotide sequence of a group A avian rotavirus genome and a comparison with its counterparts of mammalian rotaviruses

21 January 2018

1 reference

Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana

21 January 2018

1 reference

Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes

21 January 2018

1 reference

Picasso: generating a covering set of protein family profiles.

21 January 2018

1 reference

Multiple pathways cooperate in the suppression of genome instability in Saccharomyces cerevisiae

21 January 2018

1 reference

Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast

21 January 2018

1 reference

Euteleost fish genomes are characterized by expansion of gene families

21 January 2018

1 reference

MetaFam: a unified classification of protein families. II. Schema and query capabilities

21 January 2018

1 reference

MetaFam: a unified classification of protein families. I. Overview and statistics.

21 January 2018

1 reference

Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes

21 January 2018

1 reference

Targets of transcriptional regulation by transforming growth factor-beta: expression profile analysis using oligonucleotide arrays

21 January 2018

1 reference

Correlation between BCG genomics and protective efficacy

21 January 2018

1 reference

Comparative genomics of BCG vaccines

21 January 2018

1 reference

Identification of genes induced by a macrophage activator, S-28463, using gene expression array analysis

21 January 2018

1 reference

Identification of differentially expressed genes in organ-confined prostate cancer by gene expression array

21 January 2018

1 reference

Comparison of normal human skin gene expression using cDNA microarrays.

21 January 2018

1 reference

Functional analysis of drug resistance in Plasmodium falciparum in the post-genomic era.

21 January 2018

1 reference

Genomic profiling of the response of Candida albicans to itraconazole treatment using a DNA microarray

21 January 2018

1 reference

Expression profiling of gastric adenocarcinoma using cDNA array

21 January 2018

1 reference

Gene expression patterns in the lungs of patients with primary pulmonary hypertension: a gene microarray analysis

21 January 2018

1 reference

Variable expressivity and mutation databases: The androgen receptor gene mutations database

21 January 2018

1 reference

Gene expression analysis in N-methyl-4-phenyl-1,2,3,6-tetrahydropyridine mice model of Parkinson's disease using cDNA microarray: effect of R-apomorphine

21 January 2018

1 reference

Detection of multiple gene amplifications in glioblastoma multiforme using array-based comparative genomic hybridization

21 January 2018

1 reference

Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks

21 January 2018

1 reference

Profiling changes in gene expression during differentiation and maturation of monocyte-derived dendritic cells using both oligonucleotide microarrays and proteomics

21 January 2018

1 reference

Comparative genome-scale analysis of gene expression profiles in T cell lymphoma cells during malignant progression using a complementary DNA microarray

21 January 2018

1 reference

Expression profiling of ductal carcinoma in situ by laser capture microdissection and high-density oligonucleotide arrays

21 January 2018

1 reference

Genomic analysis of renal allograft dysfunction using cDNA microarrays.

21 January 2018

1 reference

Recursive partitioning for tumor classification with gene expression microarray data

21 January 2018

1 reference

Transcriptome analysis reveals a role of interferon-gamma in human neointima formation.

21 January 2018

1 reference

Transposon Insertional Mutagenesis in Rice

21 January 2018

1 reference

Transposons as tools for functional genomics

21 January 2018

1 reference

Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.

21 January 2018

1 reference

Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms

21 January 2018

1 reference

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs

21 January 2018

1 reference

Functional proteins from a random-sequence library

21 January 2018

1 reference

The utility of different representations of protein sequence for predicting functional class

21 January 2018

1 reference

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

21 January 2018

1 reference

A functional genomic analysis of type 3 Streptococcus pneumoniae virulence

21 January 2018

1 reference

Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi

21 January 2018

1 reference

Pasteurella multocida gene expression in response to iron limitation

21 January 2018

1 reference

A screen for genes required for meiosis and spore formation based on whole-genome expression.

21 January 2018

1 reference

Functional genomics of the murine immune system

21 January 2018

1 reference

Genomic approaches towards the engineering of oil seeds

21 January 2018

1 reference

Microarray analysis reveals previously unknown changes in Toxoplasma gondii-infected human cells

21 January 2018

1 reference

Transcript analysis of 1003 novel yeast genes using high-throughput northern hybridizations.

21 January 2018

1 reference

Analysis of gene expression induced by irritant and sensitizing chemicals using oligonucleotide arrays

21 January 2018

1 reference

DNA microarray analysis of cyanobacterial gene expression during acclimation to high light.

21 January 2018

1 reference

An integrated approach for genome-wide gene expression analysis.

21 January 2018

1 reference

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

21 January 2018

1 reference

Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data

21 January 2018

1 reference

Gene expression profiles during the initial phase of salt stress in rice

21 January 2018

1 reference

Analysis of variance for gene expression microarray data

21 January 2018

1 reference

DNA array analysis of changes in preovulatory gene expression in the rat ovary

21 January 2018

1 reference

Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12.

21 January 2018

1 reference

Serial analysis of gene expression (SAGE) in Plasmodium falciparum: application of the technique to A-T rich genomes.

21 January 2018

1 reference

On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data

21 January 2018

1 reference

Systematic analysis of DNA microarray data: ordering and interpreting patterns of gene expression

21 January 2018

1 reference

Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate

21 January 2018

1 reference

Expressed sequence tags for the chicken genome from a normalized 10-day-old White Leghorn whole embryo cDNA library: 1. DNA sequence characterization and linkage analysis

21 January 2018

1 reference

An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles

21 January 2018

1 reference

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

Cis-acting sites contributing to expression of divergently transcribed DAL1 and DAL4 genes in S. cerevisiae: a word of caution when correlating cis-acting sequences with genome-wide expression analyses

21 January 2018

1 reference

Transcript expression in Saccharomyces cerevisiae at high salinity

21 January 2018

1 reference

Expressed sequence tags from a NaCl-treated Suaeda salsa cDNA library

21 January 2018

1 reference

Identification of proteins in human prostate tumor material by two-dimensional gel electrophoresis and mass spectrometry

21 January 2018

1 reference

Proteomics characterization of abundant Golgi membrane proteins

21 January 2018

1 reference

Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling

21 January 2018

1 reference

Proteomic analysis of human skin fibroblasts grown on titanium: novel approach to study molecular biocompatibility

21 January 2018

1 reference

A simple method for assigning multiple immunogens to their protein on a two-dimensional blot and its application to asthma-causing allergens.

21 January 2018

1 reference

Proteomic analysis of arabidopsis seed germination and priming

21 January 2018

1 reference

Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses

21 January 2018

1 reference

Proteomic analysis of the bacterial cell cycle

21 January 2018

1 reference

Creation of genome-wide protein expression libraries using random activation of gene expression

21 January 2018

1 reference

A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 January 2018

1 reference

Improved pattern for genome-based screening identifies novel cell wall-attached proteins in gram-positive bacteria

21 January 2018

1 reference

Proteome and transcriptome based analysis of Bacillus subtilis cells overproducing an insoluble heterologous protein.

21 January 2018

1 reference

Two-dimensional electrophoretic analysis of rice proteins by polyethylene glycol fractionation for protein arrays

21 January 2018

1 reference

Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach

21 January 2018

1 reference

Changes in the brain protein levels following administration of kainic acid

21 January 2018

1 reference

Proteome Analysis of Interleukin-1 -Induced Changes in Protein Expression in Rat Islets of Langerhans

21 January 2018

1 reference

New technologies for biomarker analysis of prostate cancer progression: Laser capture microdissection and tissue proteomics

21 January 2018

1 reference

Cell immobilization induces changes in the protein response of Escherichia coli K-12 to a cold shock

21 January 2018

1 reference

Identification of putative exported/secreted proteins in prokaryotic proteomes.

21 January 2018

1 reference

Whole proteome pI values correlate with subcellular localizations of proteins for organisms within the three domains of life.

21 January 2018

1 reference

Proteome analysis of the Chlamydia pneumoniae elementary body

21 January 2018

1 reference

Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine

21 January 2018

1 reference

Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus

21 January 2018

1 reference

Protein quantification from complex protein mixtures using a proteomics methodology with single-cell resolution

21 January 2018

1 reference

Proteomic dissection of dome formation in a mammary cell line: role of tropomyosin-5b and maspin

21 January 2018

1 reference

A simple method for aligning many protein sequences.

21 January 2018

1 reference

LiveBench-1: continuous benchmarking of protein structure prediction servers

21 January 2018

1 reference

Multi-class protein fold recognition using support vector machines and neural networks.

21 January 2018

1 reference

Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes

21 January 2018

1 reference

Genomic-scale comparison of sequence- and structure-based methods of function prediction: does structure provide additional insight?

21 January 2018

1 reference

Prediction of quaternary structure from primary structure

21 January 2018

1 reference

STRAP: editor for STRuctural Alignments of Proteins

21 January 2018

1 reference

Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.

21 January 2018

1 reference

Optimal classification of protein sequences and selection of representative sets from multiple alignments: application to homologous families and lessons for structural genomics.

21 January 2018

1 reference

ProDDO: a database of disordered proteins from the Protein Data Bank (PDB).

21 January 2018

1 reference

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

21 January 2018

1 reference

Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12

21 January 2018

1 reference

Fingerprinting of signal transduction pathways using a combination of anti-phosphotyrosine immunoprecipitations and two-dimensional polyacrylamide gel electrophoresis

21 January 2018

1 reference

A motif-based profile scanning approach for genome-wide prediction of signaling pathways

21 January 2018

1 reference

Genetic steps to organ laterality in zebrafish.

21 January 2018

1 reference

Screening from a subtracted embryonic chick hindbrain cDNA library: identification of genes expressed during hindbrain, midbrain and cranial neural crest development

21 January 2018

1 reference

The use of functional genomics in C. elegans for studying human development and disease

21 January 2018

1 reference

Application of complementary DNA microarray (DNA chip) technology in the study of gene expression profiles during folliculogenesis.

21 January 2018

1 reference

Identification of differentially expressed genes in mouse development using differential display and in situ hybridization.

21 January 2018

1 reference

DNA microarrays based on noncovalent oligonucleotide attachment and hybridization in two dimensions

21 January 2018

1 reference

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

21 January 2018

1 reference

Chromatographic separations as a prelude to two-dimensional electrophoresis in proteomics analysis

21 January 2018

1 reference

Mass spectrometry for the study of protein-protein interactions.

21 January 2018

1 reference

Alkylation kinetics of proteins in preparation for two-dimensional maps: a matrix assisted laser desorption/ionization-mass spectrometry investigation

21 January 2018

1 reference

Protein alkylation in the presence/absence of thiourea in proteome analysis: a matrix assisted laser desorption/ionization-time of flight-mass spectrometry investigation

21 January 2018

1 reference

Reduction and alkylation of proteins in preparation of two-dimensional map analysis: why, when, and how?

21 January 2018

1 reference

One-step PCR amplification of complete arthropod mitochondrial genomes.

21 January 2018

1 reference

Description and application of a rapid method for genomic DNA direct sequencing

21 January 2018

1 reference

Molecular imaging in vivo with PET and SPECT.

21 January 2018

1 reference

Quantitative and reproducible two-dimensional gel analysis using Phoretix 2D Full

21 January 2018

1 reference

Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases

21 January 2018

1 reference

A gene trap vector system for identifying transcriptionally responsive genes.

21 January 2018

1 reference

Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis

21 January 2018

1 reference

Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome

21 January 2018

1 reference

High-performance liquid chromatography-electrospray ionization mass spectrometry using monolithic capillary columns for proteomic studies.

21 January 2018

1 reference

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching

21 January 2018

1 reference

Archived polyacrylamide gels as a resource for proteome characterization by mass spectrometry

21 January 2018

1 reference

Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues

21 January 2018

1 reference

Two-color labeling of oligonucleotide arrays via size-selective scattering of nanoparticle probes.

21 January 2018

1 reference

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

21 January 2018

1 reference

Attomole quantitation of protein separations with accelerator mass spectrometry

21 January 2018

1 reference

Protein variant separations using cation exchange chromatography on grafted, polymeric stationary phases

21 January 2018

1 reference

Arrays of arrays for high-throughput gene expression profiling

21 January 2018

1 reference

Aligning gene expression time series with time warping algorithms

21 January 2018

1 reference

Analysis of genomic sequences by Chaos Game Representation.

21 January 2018

1 reference

A new approach to sequence comparison: normalized sequence alignment

21 January 2018

1 reference

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

21 January 2018

1 reference

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

21 January 2018

1 reference

Application of InterPro for the functional classification of the proteins of fish origin in SWISS-PROT and TrEMBL.

21 January 2018

1 reference

Efficient large-scale sequence comparison by locality-sensitive hashing.

21 January 2018

1 reference

BioMolQuest: integrated database-based retrieval of protein structural and functional information.

21 January 2018

1 reference

MAPS: a microarray project system for gene expression experiment information and data validation

21 January 2018

1 reference

In silico mining of EST databases for novel pre-implantation embryo-specific zinc finger protein genes

21 January 2018

1 reference

SCORE: predicting the core of protein models.

21 January 2018

1 reference

J-Express: exploring gene expression data using Java

21 January 2018

1 reference

Retrieval and on-the-fly alignment of sequence fragments from the HIV database.

21 January 2018

1 reference

Program description: Strategies for biological annotation of mammalian systems: implementing gene ontologies in mouse genome informatics.

21 January 2018

1 reference

Database verification studies of SWISS-PROT and GenBank

21 January 2018

1 reference

Clustering of highly homologous sequences to reduce the size of large protein databases

21 January 2018

1 reference

SOAP, cleaning multiple alignments from unstable blocks

21 January 2018

1 reference

Analysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters.

21 January 2018

1 reference

Mining literature for protein-protein interactions.

21 January 2018

1 reference

Use of keyword hierarchies to interpret gene expression patterns.

21 January 2018

1 reference

Mocca: semi-automatic method for domain hunting

21 January 2018

1 reference

Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis.

21 January 2018

1 reference

GenEST, a powerful bidirectional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP

21 January 2018

1 reference

Evaluation of gene-finding programs on mammalian sequences

21 January 2018

1 reference

ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches.

21 January 2018

1 reference

Isolation of novel heart-specific genes using the BodyMap database

21 January 2018

1 reference

Limits of homology detection by pairwise sequence comparison.

21 January 2018

1 reference

A relational schema for both array-based and SAGE gene expression experiments

21 January 2018

1 reference

NIFAS: visual analysis of domain evolution in proteins

21 January 2018

1 reference

PALI: a database of alignments and phylogeny of homologous protein structures

21 January 2018

1 reference

ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions

21 January 2018

1 reference

Missing value estimation methods for DNA microarrays

21 January 2018

1 reference

SVDMAN--singular value decomposition analysis of microarray data.

21 January 2018

1 reference

Identification of novel families of membrane proteins from the model plant Arabidopsis thaliana.

21 January 2018

1 reference

Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition

21 January 2018

1 reference

AMADA: analysis of microarray data

21 January 2018

1 reference

Validating clustering for gene expression data.

21 January 2018

1 reference

Rice bioinformatics. analysis of rice sequence data and leveraging the data to other plant species

21 January 2018

1 reference

A survey of the Leishmania major Friedlin strain V1 genome by shotgun sequencing: a resource for DNA microarrays and expression profiling

21 January 2018

1 reference

Massive Sequence Comparisons as a Help in Annotating Genomic Sequences

21 January 2018

1 reference

ToothPrint, a proteomic database for dental tissues.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Matrix-assisted laser desorption/ionization quadrupole time-of-flight mass spectrometry: an elegant tool for peptidomics

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Proteome studies of human cerebrospinal fluid and brain tissue using a preparative two-dimensional electrophoresis approach prior to mass spectrometry

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Separation and identification of rat skeletal muscle proteins using two-dimensional gel electrophoresis and mass spectrometry

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Differential protein expression in rat trigeminal ganglia during inflammation

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

A combined radiolabelling and silver staining technique for improved visualisation, localisation, and identification of proteins separated by two-dimensional gel electrophoresis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Chemiluminescent standards for quantitative comparison of two-dimensional electrophoresis western blots

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Glycosylation analysis of gel-separated proteins

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Ion intensity analysis of post-source decay fragmentation in curved-field reflectron matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of carbohydrates: for structural characterization of glycosylation in proteome analysis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Glycome project: concept, strategy and preliminary application to Caenorhabditis elegans

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

A high-performance liquid chromatography based strategy for rapid, sensitive sequencing of N-linked oligosaccharide modifications to proteins in sodium dodecyl sulphate polyacrylamide electrophoresis gel bands

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Annotation of glycoproteins in the SWISS-PROT database

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

A glycomic approach to the identification and characterization of glycoprotein function in cells transfected with glycosyltransferase genes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Phospho-proteomics: evaluation of the use of enzymatic de-phosphorylation and differential mass spectrometric peptide mass mapping for site specific phosphorylation assignment in proteins separated by gel electrophoresis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Sequence-based structural signatures of genome evolution.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Massive sequence comparisons as a help in annotating genomic sequences

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Microarray analysis of the in vivo effects of hypophysectomy and growth hormone treatment on gene expression in the rat.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Software scripts for quality checking of high-throughput nucleic acid sequencers.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Gene microarray analysis reveals a novel hypoxia signal transduction pathway in human hepatocellular carcinoma cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Molecular profiling of transformed and metastatic murine squamous carcinoma cells by differential display and cDNA microarray reveals altered expression of multiple genes related to growth, apoptosis, angiogenesis, and the NF-kappaB signal pathway

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Tissue microdissection techniques in quantitative genome and gene expression analyses.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Functional classification of interferon-stimulated genes identified using microarrays

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Bioinformatics beyond sequence: mapping gene function in the embryo

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

A two-dimensional protein map of Caenorhabditis elegans

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Identification and characterization of the potential promoter regions of 1031 kinds of human genes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

A novel subfractionation approach for mitochondrial proteins: a three-dimensional mitochondrial proteome map.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Practical aspects of fluorescent staining for proteomic applications

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

A literature network of human genes for high-throughput analysis of gene expression

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Toward proteomics in uroscopy: urinary protein profiles after radiocontrast medium administration.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

[Gene expression profiling in human mesothelioma cells using DNA microarray and high-density filter array technologies]

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Functional genomic studies of aldo-keto reductases.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Assessment of prediction accuracy of protein function from protein--protein interaction data

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Peptidomics: the comprehensive analysis of peptides in complex biological mixtures

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

High-throughput screening of surface displayed gene products

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

The baculovirus expression system as a tool for generating diversity by viral surface display

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Surface display on gram positive bacteria

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

The powerful combination of phage surface display of cDNA libraries and high throughput screening

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Shotgun phage display cloning

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Alternative bacteriophage display systems.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

High-density microarrays for gene expression analysis

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Analysis of 94 kb of the chlorella virus PBCV-1 330-kb genome: map positions 88 to 182.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447222

Packed Capillary Reversed-Phase Liquid Chromatography with High-Performance Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry for Proteomics

2 November 2018

1 reference

High-Throughput Proteomics Using High-Efficiency Multiple-Capillary Liquid Chromatography with On-Line High-Performance ESI FTICR Mass Spectrometry

21 January 2018

1 reference

Arabidopsis encyclopedia using full-length cDNAs and its application

21 January 2018

1 reference

[Possibilities of broad spectrum analysis of gene expression patterns with cDNA arrays]

21 January 2018

1 reference

Clinical pharmacogenomics: applications in pharmaceutical R&D

21 January 2018

1 reference

Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex

21 January 2018

1 reference

Genview and Gencode : a pair of programs to test theories of genetic code evolution

21 January 2018

1 reference

Active retrotransposons are a common feature of grass genomes

21 January 2018

1 reference

A subtractive hybridisation analysis of genomic differences between the uropathogenic E. coli strain 536 and the E. coli K-12 strain MG1655

21 January 2018

1 reference

Comparative Sequence Analysis Reveals Extensive Microcolinearity in the Lateral Suppressor Regions of the Tomato, Arabidopsis, and Capsella Genomes

21 January 2018

1 reference

Gene families from the Arabidopsis thaliana pollen coat proteome

21 January 2018

1 reference

Detection of differentially regulated genes in keratinocytes by cDNA array hybridization: Hsp27 and other novel players in response to artificial ultraviolet radiation

21 January 2018

1 reference

Rapid and diverse changes of gene expression in the kidneys of protein-overload proteinuria mice detected by microarray analysis

21 January 2018

1 reference

Glycome project: Concept, strategy and preliminary application toCaenorhabditis elegans

21 January 2018

1 reference

Proteomic profiling from human samples: the body fluid alternative

21 January 2018

1 reference

Strategy for protein isoform identification from expressed sequence tags and its application to peptide mass fingerprinting

21 January 2018

1 reference

Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. I. Profiling an unfractionated tryptic digest

21 January 2018

1 reference

New perspectives in the Escherichia coli proteome investigation

21 January 2018

1 reference

Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins

21 January 2018

1 reference

An approach to improving multiple alignments of protein sequences using predicted secondary structure

21 January 2018

1 reference

Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. II. Limitations of complex mixture analyses

21 January 2018

1 reference

A new method of preparing fiber-optic DNA biosensor and its array for gene detection

21 January 2018

1 reference

Nanoflow Gradient Generator Coupled with μ-LC−ESI-MS/MS for Protein Identification

21 January 2018

1 reference

Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology

21 January 2018

1 reference

SeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services

21 January 2018

1 reference

PhyloBLAST: facilitating phylogenetic analysis of BLAST results

21 January 2018

1 reference

MutaProt: a web interface for structural analysis of point mutations

21 January 2018

1 reference

The HIB database of annotated UniGene clusters

21 January 2018

1 reference

Basic Gene Grammars and DNA-ChartParser for language processing of Escherichia coli promoter DNA sequences

21 January 2018

1 reference

Compositional symmetries in complete genomes

21 January 2018

1 reference

The mouse SWISS-2D PAGE database: a tool for proteomics study of diabetes and obesity

21 January 2018

1 reference