Whole-genome expression analysis: challenges beyond clustering (Q34282441)

1 August 2017

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title

Whole-genome expression analysis: challenges beyond clustering (English)

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1 August 2017

whole genome sequencing

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R B Altman

1

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PubMed ID

11406385

1 August 2017

S Raychaudhuri

series ordinal

2

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1 August 2017

1 June 2001

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Current Opinion in Structural Biology

1 August 2017

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1 August 2017

11

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1 August 2017

340-347

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1 August 2017

3

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Exploring the metabolic and genetic control of gene expression on a genomic scale

1 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

A genome-wide transcriptional analysis of the mitotic cell cycle

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7 January 2021

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Microarray analysis of Drosophila development during metamorphosis.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Fundamental patterns underlying gene expression profiles: simplicity from complexity

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Computational methods for the identification of differential and coordinated gene expression.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Generation of patterns from gene expression data by assigning confidence to differentially expressed genes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Widespread aneuploidy revealed by DNA microarray expression profiling.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Molecular classification of cutaneous malignant melanoma by gene expression profiling

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Systematic variation in gene expression patterns in human cancer cell lines

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Clustering gene expression patterns

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

A gene expression database for the molecular pharmacology of cancer

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Dissecting the regulatory circuitry of a eukaryotic genome

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Functional discovery via a compendium of expression profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

The transcriptional program in the response of human fibroblasts to serum

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion

1 reference

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7 January 2021

The genetic program of hematopoietic stem cells

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Cluster analysis and display of genome-wide expression patterns

1 reference

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7 January 2021

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Analysis of gene expression data using self-organizing maps

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Exploring expression data: identification and analysis of coexpressed genes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Systematic determination of genetic network architecture

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

A web site for the computational analysis of yeast regulatory sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Predicting gene regulatory elements in silico on a genomic scale

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Information content of binding sites on nucleotide sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

A combined algorithm for genome-wide prediction of protein function

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Knowledge-based analysis of microarray gene expression data by using support vector machines

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Circuit simulation of genetic networks.

1 reference

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7 January 2021

Inferring qualitative relations in genetic networks and metabolic pathways

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Linear modeling of mRNA expression levels during CNS development and injury.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Using Bayesian networks to analyze expression data

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Validating clustering for gene expression data.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

A hierarchical unsupervised growing neural network for clustering gene expression patterns

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Regulatory element detection using correlation with expression.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Use of keyword hierarchies to interpret gene expression patterns.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

Missing value estimation methods for DNA microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2800%2900212-8

7 January 2021

10.1016/S0959-440X(00)00212-8

Identifiers

DOI

1 reference

1 August 2017

1 reference

PubMed ID

11406385