Early detection of invasive species in marine ecosystems using high-throughput sequencing: technical challenges and possible solutions (Q56394957)

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Arctic root-associated fungal community composition reflects environmental filtering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Low host specificity of root-associated fungi at an Arctic site

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Use of DNA barcoding to detect invertebrate invasive species from diapausing eggs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Ecological roulette: the global transport of nonindigenous marine organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Metagenetic tools for the census of marine meiofaunal biodiversity: An overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Metabarcoding is powerful yet still blind: a comparative analysis of morphological and molecular surveys of seagrass communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

From molecules to management: adopting DNA-based methods for monitoring biological invasions in aquatic environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Take a risk: Preferring prevention over control of biological invaders

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Detection of a colonizing, aquatic, non-indigenous species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

“Sight-unseen” detection of rare aquatic species using environmental DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

DNA barcoding commercially important fish species of Turkey.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Conservation science: a 20-year report card

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Introduction and use of non-native species for aquaculture in China: status, risks and management solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Starting a DNA barcode reference library for shallow water polychaetes from the southern European Atlantic coast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Biological invasions: recommendations for U.S. policy and management

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Molecular detection of invasive species in heterogeneous mixtures using a microfluidic carbon nanotube platform

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Combining high-throughput sequencing with fruit body surveys reveals contrasting life-history strategies in fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Are invasive species most successful in habitats of low native species richness across European brackish water seas?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Next generation sequencing for characterizing biodiversity: promises and challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

The 'rare biosphere': a reality check

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Fast identification and removal of sequence contamination from genomic and metagenomic datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Tag jumps illuminated--reducing sequence-to-sample misidentifications in metabarcoding studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

DNA barcoding of recently diverged species: relative performance of matching methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

A pound of prevention, plus a pound of cure: Early detection and eradication of invasive species in the Laurentian Great Lakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Metabarcoding approach for the ballast water surveillance--an advantageous solution or an awkward challenge?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Influence of artifact removal on rare species recovery in natural complex communities using high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Ascidians as models for studying invasion success

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Reproducibility and quantitation of amplicon sequencing-based detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Random sampling process leads to overestimation of β-diversity of microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2911-1