Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi (Q24630304)

3

object named as

Sabine Huhndorf

0 references

Conrad Lamoraal Schoch

1

object named as

Conrad L Schoch

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author name string

Keith A Seifert

2

0 references

Vincent Robert

4

0 references

John L Spouge

5

0 references

C André Levesque

Proceedings of the National Academy of Sciences of the United States of America

6

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language of work or name

English

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publication date

17 April 2012

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published in

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volume

109

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page(s)

6241-6

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issue

16

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cites work

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7 April 2017

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7 April 2017

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Reconstructing the early evolution of Fungi using a six-gene phylogeny

7 April 2017

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

7 April 2017

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The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods

7 April 2017

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Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis

7 April 2017

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A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names

7 April 2017

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Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level

7 April 2017

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The diversity of Terfezia desert truffles: new species and a highly variable species complex with intrasporocarpic nrDNA ITS heterogeneity

26 May 2017

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Molecular diversity of fungal communities in agricultural soils from Lower Austria

26 May 2017

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Validation and justification of the phylum name Cryptomycota phyl. nov.

27 September 2017

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Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Comparing COI and ITS as DNA barcode markers for mushrooms and allies (Agaricomycotina).

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi

27 September 2017

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DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer

27 September 2017

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Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales).

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Increasing ecological inference from high throughput sequencing of fungi in the environment through a tagging approach

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Multiple copies of cytochrome oxidase 1 in species of the fungal genus Fusarium

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Discovery of novel intermediate forms redefines the fungal tree of life

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Cantharellus texensis sp. nov. from Texas, a southern lookalike of C. cinnabarinus revealed by tef-1 sequence data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences.

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Recent developments in the taxonomic affiliation and phylogenetic positioning of fungi: impact in applied microbiology and environmental biotechnology

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Internet-accessible DNA sequence database for identifying fusaria from human and animal infections

27 September 2017

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A constructive step towards selecting a DNA barcode for fungi

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

27 September 2017

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Evolution of the sex-related locus and genomic features shared in microsporidia and fungi

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

DNA barcoding of arbuscular mycorrhizal fungi

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

New primers for promising single-copy genes in fungal phylogenetics and systematics.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

The search for the fungal tree of life

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

The environmental clade LKM11 and Rozella form the deepest branching clade of fungi

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

'Glomus intraradices DAOM197198', a model fungus in arbuscular mycorrhiza research, is not Glomus intraradices.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Molecular phylogenetic biodiversity assessment of arctic and boreal ectomycorrhizal Lactarius Pers. (Russulales; Basidiomycota) in Alaska, based on soil and sporocarp DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Biodiversity in the Cladosporium herbarum complex (Davidiellaceae, Capnodiales), with standardisation of methods for Cladosporium taxonomy and diagnostics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

The current status of species recognition and identification in Aspergillus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Fungal community analysis by large-scale sequencing of environmental samples

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Fungal evolution: the case of the vanishing mitochondrion

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Molecular phylogeny of Zygomycota based on EF-1alpha and RPB1 sequences: limitations and utility of alternative markers to rDNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Phylogenetic species recognition and species concepts in fungi

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

Guidelines reduce the risk of brain-scan shock.

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Evaluation of mitochondrial genes as DNA barcode for Basidiomycota

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Genetic distances within and among species in monophyletic lineages of Parmeliaceae (Ascomycota) as a tool for taxon delimitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Higher-level phylogeny of Foraminifera inferred from the RNA polymerase II (RPB1) gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Assessing the performance of single-copy genes for recovering robust phylogenies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Testing the phylogenetic utility of MCM7 in the Ascomycota

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Intragenomic variation of fungal ribosomal genes is higher than previously thought.

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Probable Inference, the Law of Succession, and Statistical Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

DNA barcoding a useful tool for taxonomists

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3341068

DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context

28 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1117018109

Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus

21 January 2018

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12 December 2020

1 reference

12 December 2020

Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions

1 reference

12 December 2020

Relationships of microsporidian genera, with emphasis on the polysporous genera, revealed by sequences of the largest subunit of RNA polymerase II (RPB1)

1 reference

12 December 2020

Molecular diversity assessment of arctic and borealAgaricustaxa

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1117018109

1 reference

release_ouu65uniwfhb3ibv4xvw7ggtuu

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1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ouu65uniwfhb3ibv4xvw7ggtuu

24 November 2022

mapped directly with Wikidata item

733548

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