dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. (Q55476048)

12 July 2018

title

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. (English)

1 reference

12 July 2018

0 references

Peter K Busk

7

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author name string

Han Zhang

1

1 reference

12 July 2018

Tanner Yohe

2

1 reference

12 July 2018

Le Huang

3

1 reference

12 July 2018

Sarah Entwistle

4

1 reference

12 July 2018

Peizhi Wu

5

1 reference

12 July 2018

Zhenglu Yang

6

1 reference

12 July 2018

Ying Xu

8

1 reference

12 July 2018

Yanbin Yin

9

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12 July 2018

language of work or name

English

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publication date

1 July 2018

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12 July 2018

published in

Nucleic Acids Research

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12 July 2018

volume

46

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12 July 2018

issue

W1

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12 July 2018

page(s)

W95-W101

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12 July 2018

Creative Commons Attribution-NonCommercial 4.0 International

copyright license

start time

16 May 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Polysaccharide Utilization Loci: Fueling Microbial Communities

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

MOCAT2: a metagenomic assembly, annotation and profiling framework

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

DemaDb: an integrated dematiaceous fungal genomes database

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Prebiotics and synbiotics: dietary strategies for improving gut health.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Glycan complexity dictates microbial resource allocation in the large intestine

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Fast and sensitive protein alignment using DIAMOND

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

PlantCAZyme: a database for plant carbohydrate-active enzymes.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

The carbohydrate-active enzymes database (CAZy) in 2013

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Function-based classification of carbohydrate-active enzymes by recognition of short, conserved peptide motifs

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Microbial degradation of complex carbohydrates in the gut

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

SignalP 4.0: discriminating signal peptides from transmembrane regions

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

HMMER web server: interactive sequence similarity searching

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

FragGeneScan: predicting genes in short and error-prone reads

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Prodigal: prokaryotic gene recognition and translation initiation site identification

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

PULDB: the expanded database of Polysaccharide Utilization Loci

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6031026

29 September 2018

Identifiers

DOI

10.1093/NAR/GKY418

1 reference

12 July 2018

journals/nar/ZhangYHEWYBXY18

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

12 July 2018

PubMed ID

29771380

1 reference

12 July 2018