proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes (Q36239827)

13 August 2017

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes (English)

1 reference

13 August 2017

2

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13 August 2017

5

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13 August 2017

7

Peer Bork

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Shinichi Sunagawa

6

Shinichi Sunagawa

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Simone S Li

Simone S Li

4

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Daniel R Mende

Daniel R Mende

1

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Jaime Huerta-Cepas

3

Jaime Huerta-Cepas

1 reference

PMCID

5210662

13 August 2017

language of work or name

English

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publication date

24 October 2016

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13 August 2017

Nucleic Acids Research

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13 August 2017

45

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13 August 2017

D1

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13 August 2017

D529-D534

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Creative Commons Attribution 4.0 International

13 August 2017

start time

4 January 2017

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Antimicrobial Resistance Prediction in PATRIC and RAST.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Ensembl Genomes 2016: more genomes, more complexity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

KEGG as a reference resource for gene and protein annotation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Update on RefSeq microbial genomes resources

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

The carbohydrate-active enzymes database (CAZy) in 2013

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

PATRIC, the bacterial bioinformatics database and analysis resource

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

MetaRef: a pan-genomic database for comparative and community microbial genomics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

IMG 4 version of the integrated microbial genomes comparative analysis system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Metagenomic species profiling using universal phylogenetic marker genes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

The comprehensive antibiotic resistance database.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Genomic variation landscape of the human gut microbiome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Microbiology in the post-genomic era.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Advanced sequencing technologies and their wider impact in microbiology

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

The species concept for prokaryotes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

The Minimal Gene Complement of Mycoplasma genitalium

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Accurate and universal delineation of prokaryotic species.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Ecology drives a global network of gene exchange connecting the human microbiome.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

Genome-wide experimental determination of barriers to horizontal gene transfer.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210662

The species concept for prokaryotes

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW989

Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW989

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW989

1 reference

journals/nar/MendeLHLFSB17

13 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

13 August 2017

1 reference

PMCID

5210662