Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis. (Q55368085)

4 July 2018

title

Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis. (English)

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4 July 2018

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2

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Mikko S Venäläinen

3

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4 July 2018

Juhani S Koskinen

Juhani S Koskinen

4

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Markus Juonala

Markus T Juonala

6

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Laura L. Elo

Laura L Elo

10

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David R Goodlett

11

David R Goodlett

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4 July 2018

Olli Raitakari

13

Olli T Raitakari

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4 July 2018

Jorma Viikari

9

Jorma S A Viikari

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4 July 2018

Riitta Lahesmaa

12

Riitta Lahesmaa

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4 July 2018

author name string

Santosh D Bhosale

1

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4 July 2018

Niina Pitkänen

5

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4 July 2018

Mika A P Kähönen

7

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Terho J Lehtimäki

8

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language of work or name

English

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publication date

15 June 2018

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4 July 2018

published in

Scientific Reports

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4 July 2018

volume

8

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4 July 2018

issue

1

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4 July 2018

page(s)

9209

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4 July 2018

Creative Commons Attribution 4.0 International

copyright license

start time

15 June 2018

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

ROTS: An R package for reproducibility-optimized statistical testing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

The Perseus computational platform for comprehensive analysis of (prote)omics data

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

2016 update of the PRIDE database and its related tools

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

The relationship between carotid intima-media thickness and carotid plaque in the Northern Manhattan Study

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Atherosclerosis: process, indicators, risk factors and new hopes

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Local carotid atherosclerotic plaque proteins for the identification of circulating biomarkers in coronary patients.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Plasma levels of the arterial wall protein fibulin-1 are associated with carotid-femoral pulse wave velocity: a cross-sectional study

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Proteoform: a single term describing protein complexity

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

A proteomic portrait of atherosclerosis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Using iRT, a normalized retention time for more targeted measurement of peptides

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Biomarker discovery in serum from patients with carotid atherosclerosis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

PASSEL: the PeptideAtlas SRMexperiment library

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

The -omics era: proteomics and lipidomics in vascular research

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Fibulin-1 is a marker for arterial extracellular matrix alterations in type 2 diabetes

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

pROC: an open-source package for R and S+ to analyze and compare ROC curves

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Andromeda: a peptide search engine integrated into the MaxQuant environment

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Regularization Paths for Generalized Linear Models via Coordinate Descent

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Fibulin-1 and fibrinogen in human atherosclerotic lesions

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Interpretation of shotgun proteomic data: the protein inference problem

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Fibulins: physiological and disease perspectives.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Inflammation in atherosclerosis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Origin of atherosclerosis in childhood and adolescence

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

The response-to-retention hypothesis of early atherogenesis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Mass Spectrometry-Based Serum Proteomics for Biomarker Discovery and Validation.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Total and isoform-specific quantitative assessment of circulating fibulin-1 using selected reaction monitoring MS and time-resolved immunofluorometry

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Global variation in the relative burden of stroke and ischemic heart disease

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Adiponectin is related with carotid artery intima-media thickness and brachial flow-mediated dilatation in young adults--the Cardiovascular Risk in Young Finns Study

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Follow-ups of the Cardiovascular Risk in Young Finns Study in 2001 and 2007: levels and 6-year changes in risk factors

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Reproducibility-optimized test statistic for ranking genes in microarray studies

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Computational prediction of proteotypic peptides for quantitative proteomics.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Plasma proteome profiling of atherosclerotic disease manifestations reveals elevated levels of the cytoskeletal protein vinculin

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Tissue inhibitor of matrix metalloproteinases 4 (TIMP4) in a population of young adults: Relations to cardiovascular risk markers and carotid artery intima-media thickness. The Cardiovascular Risk in Young Finns Study

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

Cardiovascular Risk Factors in Childhood and Carotid Artery Intima-Media Thickness in Adulthood

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6003912

The response-to-retention hypothesis of atherogenesis reinforced

30 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-27265-9

7 January 2021

Imaging of atherosclerosis: carotid intima-media thickness

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-27265-9

7 January 2021

Association Between Fibulin-1 and Aortic Augmentation Index in Male Patients with Peripheral Arterial Disease

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-27265-9

7 January 2021

Association between arterial stiffness and atherosclerosis: the Rotterdam Study

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-27265-9

7 January 2021

Secretome analysis of atherosclerotic and non-atherosclerotic arteries reveals dynamic extracellular remodeling during pathogenesis

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-27265-9

7 January 2021

Quit smoking to outsmart atherogenesis: Molecular mechanisms underlying clinical evidence

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-27265-9

7 January 2021

10.1038/S41598-018-27265-9

Identifiers

DOI

1 reference

4 July 2018

PMCID

6003912

1 reference

4 July 2018

PubMed ID

29907817

1 reference

4 July 2018