How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research (Q54704055)

https://api.crossref.org/works/10.1111%2FSYEN.12071

Comparative genomics of mitochondrial DNA in members of the Drosophila melanogaster subgroup.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genome sequences of Nematocera (lower Diptera): evidence of rearrangement following a complete genome duplication in a winter crane fly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Evolution of the mitochondrial genomes of gall midges (Diptera: Cecidomyiidae): rearrangement and severe truncation of tRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial pseudogenes: evolution's misplaced witnesses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

MITOS: improved de novo metazoan mitochondrial genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Requirements and standards for organelle genome databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Gene translocation links insects and crustaceans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Sequencing and comparing whole mitochondrial genomes of animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The mitochondrial genome of the onychophoran Opisthopatus cinctipes (Peripatopsidae) reflects the ancestral mitochondrial gene arrangement of Panarthropoda and Ecdysozoa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genomes: anything goes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Insect mitochondrial genomics: implications for evolution and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genomic comparisons of the subterranean termites from the Genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

A mitochondrial genome phylogeny of the Neuropterida (lace-wings, alderflies and snakeflies) and their relationship to the other holometabolous insect orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

A mitochondrial genome phylogeny of termites (Blattodea: Termitoidae): robust support for interfamilial relationships and molecular synapomorphies define major clades

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Genes for cytochromecoxidase subunit I, URF2, and three tRNAs inDrosophilamitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Extraordinary number of gene rearrangements in the mitochondrial genomes of lice (Phthiraptera: Insecta).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitochondrial genome of the sexual oribatid mite Steganacarus magnus: genome rearrangements and loss of tRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera--a lineage with both rapidly and slowly evolving mitochondrial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Drosophila RNase Z processes mitochondrial and nuclear pre-tRNA 3' ends in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitochondrial genome sequence of the Mormon cricket (Anabrus simplex: Tettigoniidae: Orthoptera) and an analysis of control region variability

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Field guide to next-generation DNA sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitochondrial genome of the oriental fruit moth Grapholita molesta (Busck) (Lepidoptera: Tortricidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitogenome sequences stabilize the phylogenetics of weevils (Curculionoidea) and establish the monophyly of larval ectophagy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitochondrial genome of the yellow coaster, Acraea issoria (Lepidoptera: Nymphalidae: Heliconiinae: Acraeini): sequence, gene organization and a unique tRNA translocation event.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Comparative and phylogenomic studies on the mitochondrial genomes of Pentatomomorpha (Insecta: Hemiptera: Heteroptera).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The de novo assembly of mitochondrial genomes of the extinct passenger pigeon (Ectopistes migratorius) with next generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Genome sequence of the pea aphid Acyrthosiphon pisum

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The mitochondrial genome of the Korean hairstreak, Coreana raphaelis (Lepidoptera: Lycaenidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The mitochondrial genome of the smaller tea tortrix Adoxophyes honmai (Lepidoptera: Tortricidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

MitoZoa: A curated mitochondrial genome database of metazoans for comparative genomics studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genome sequence and expression profiling for the legume pod borer Maruca vitrata (Lepidoptera: Crambidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Infernal 1.0: inference of RNA alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The RNA-Seq approach to studying the expression of mosquito mitochondrial genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Beyond barcoding: a mitochondrial genomics approach to molecular phylogenetics and diagnostics of blowflies (Diptera: Calliphoridae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

tRNA punctuation model of RNA processing in human mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp nasonia (hymenoptera: pteromalidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitogenomics at the base of Metazoa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Pseudoscorpion mitochondria show rearranged genes and genome-wide reductions of RNA gene sizes and inferred structures, yet typical nucleotide composition bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

DmTTF, a novel mitochondrial transcription termination factor that recognises two sequences of Drosophila melanogaster mitochondrial DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Amplification of complete insect mitochondrial genome in two easy pieces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Structural elements highly preserved during the evolution of the D-loop-containing region in vertebrate mitochondrial DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Replication origin of mitochondrial DNA in insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genomics in Orthoptera using MOSAS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Incorporating Molecular Evolution into Phylogenetic Analysis, and a New Compilation of Conserved Polymerase Chain Reaction Primers for Animal Mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Complete sequence of the mitochondrial genome of the Japanese buff-tip moth, Phalera flavescens (Lepidoptera: Notodontidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The mitochondrial genome: structure, transcription, translation and replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Expression profiling of Drosophila mitochondrial genes via deep mRNA sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Complete mitochondrial genome of the free-living earwig, Challia fletcheri (Dermaptera: Pygidicranidae) and phylogeny of Polyneoptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The first mitochondrial genome for the fishfly subfamily Chauliodinae and implications for the higher phylogeny of Megaloptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The multipartite mitochondrial genome of Liposcelis bostrychophila: insights into the evolution of mitochondrial genomes in bilateral animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitochondrial genome of a turbinid vetigastropod from MiSeq Illumina sequencing of genomic DNA and steps towards a resolved gastropod phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Selective enrichment and sequencing of whole mitochondrial genomes in the presence of nuclear encoded mitochondrial pseudogenes (numts)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Automatic annotation of organellar genomes with DOGMA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Use of a PCR-based approach for sequencing whole mitochondrial genomes of insects: two examples (cockroach and dragonfly) based on the method developed for decapod crustaceans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mitochondrial genome of the cotton bollworm Helicoverpa armigera (Lepidoptera: Noctuidae) and comparison with other Lepidopterans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Significant levels of sequence divergence and gene rearrangements have occurred between the mitochondrial genomes of the wild mulberry silkmoth, Bombyx mandarina, and its close relative, the domesticated silkmoth, Bombyx mori.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

The complete mitochondrial genome of Spilonota lechriaspis Meyrick (Lepidoptera: Tortricidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Ancestral gene organization in the mitochondrial genome of Thyridosmylus langii (McLachlan, 1870) (Neuroptera: Osmylidae) and implications for lacewing evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071

When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12071