Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells. (Q54220039)

26 May 2018

title

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells. (English)

1 reference

26 May 2018

author

Lance Parsons

4

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26 May 2018

Birgitte Regenberg

6

1 reference

26 May 2018

Henrik D Møller

object named as

Henrik D Møller

1

0 references

David Botstein

5

object named as

David Botstein

1 reference

26 May 2018

Rasmus K Bojsen

2

1 reference

26 May 2018

Chris Tachibana

3

1 reference

26 May 2018

publication date

4 April 2016

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26 May 2018

Journal of Visualized Experiments

published in

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26 May 2018

page(s)

e54239 |

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26 May 2018

issue

110

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26 May 2018

Production of Extrachromosomal MicroDNAs Is Linked to Mismatch Repair Pathways and Transcriptional Activity

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Extrachromosomal circular DNA is common in yeast

26 May 2018

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Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma

26 May 2018

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An improved method for including upper size range plasmids in metamobilomes

26 May 2018

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High rate of disease-related copy number variations in childhood onset schizophrenia.

26 May 2018

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Global increases in both common and rare copy number load associated with autism

26 May 2018

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Metamobilomics--expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing

26 May 2018

1 reference

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Insights into the bovine rumen plasmidome

26 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues

26 May 2018

1 reference

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Fast gapped-read alignment with Bowtie 2

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Genetic variation and the fate of beneficial mutations in asexual populations

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

The tandem inversion duplication in Salmonella enterica: selection drives unstable precursors to final mutation types

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Duplication frequency in a population of Salmonella enterica rapidly approaches steady state with or without recombination

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Extrachromosomal double minutes and chromosomal homogeneously staining regions as probes for chromosome research

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Mapping and sequencing of structural variation from eight human genomes

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Cell-free cloning using phi29 DNA polymerase

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Galaxy: a platform for interactive large-scale genome analysis

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Suppressor analysis of fimbrin (Sac6p) overexpression in yeast

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Formation of extrachromosomal circular DNA in HeLa cells by nonhomologous recombination

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Induction of differentiation in HL60 cells by the reduction of extrachromosomally amplified c-myc

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Physical and topological properties of circular DNA.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Identification of autonomously replicating circular subtelomeric Y' elements in Saccharomyces cerevisiae

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Amplified human MYC oncogenes localized to replicating submicroscopic circular DNA molecules

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Yeast actin-binding proteins: evidence for a role in morphogenesis

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Double minute chromosomes can be produced from precursors derived from a chromosomal deletion

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

A central role for chromosome breakage in gene amplification, deletion formation, and amplicon integration

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Effects of hydroxyurea on extrachromosomal DNA in patients with advanced ovarian carcinomas.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4841354

Formation of circular amplifications in Saccharomyces cerevisiae by a breakage-fusion-bridge mechanism

2 November 2018

1 reference

12 December 2020

Small polydisperse circular DNA of HeLa cells

1 reference

12 December 2020

High levels of profilin suppress the lethality caused by overproduction of actin in yeast cells

1 reference

12 December 2020

Curing Saccharomyces cerevisiae of the 2 micron plasmid by targeted DNA damage

1 reference

12 December 2020

Identifiers

DOI

10.3791/54239

1 reference

26 May 2018

PMCID

4841354

1 reference

26 May 2018

PubMed ID

27077531

1 reference

26 May 2018