UDiTaS™, a genome editing detection method for indels and genome rearrangements. (Q52430935)

1 May 2018

title

UDiTaS™, a genome editing detection method for indels and genome rearrangements. (English)

1 reference

1 May 2018

Christopher J Wilson

14

0 references

author name string

Georgia Giannoukos

1

1 reference

1 May 2018

Dawn M Ciulla

2

1 reference

1 May 2018

Eugenio Marco

3

1 reference

1 May 2018

Hayat S Abdulkerim

4

1 reference

1 May 2018

Luis A Barrera

5

1 reference

1 May 2018

Anne Bothmer

6

1 reference

1 May 2018

Vidya Dhanapal

7

1 reference

1 May 2018

Sebastian W Gloskowski

8

1 reference

1 May 2018

Hariharan Jayaram

9

1 reference

1 May 2018

Morgan L Maeder

10

1 reference

1 May 2018

Maxwell N Skor

11

1 reference

1 May 2018

Tongyao Wang

12

1 reference

1 May 2018

Vic E Myer

13

1 reference

1 May 2018

language of work or name

English

0 references

publication date

21 March 2018

1 reference

1 May 2018

published in

BMC Genomics

1 reference

1 May 2018

volume

19

1 reference

1 May 2018

issue

1

1 reference

1 May 2018

page(s)

212

1 reference

1 May 2018

Creative Commons Attribution 4.0 International

copyright license

start time

21 March 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12864-018-4561-9

0 references

cites work

DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Characterization of the interplay between DNA repair and CRISPR/Cas9-induced DNA lesions at an endogenous locus

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Detecting DNA double-stranded breaks in mammalian genomes by linear amplification-mediated high-throughput genome-wide translocation sequencing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Induction of site-specific chromosomal translocations in embryonic stem cells by CRISPR/Cas9.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Basal exon skipping and genetic pleiotropy: A predictive model of disease pathogenesis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Quantifying on- and off-target genome editing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Comparison of T7E1 and surveyor mismatch cleavage assays to detect mutations triggered by engineered nucleases

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Easy quantitative assessment of genome editing by sequence trace decomposition

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Chromosomal translocations in human cells are generated by canonical nonhomologous end-joining.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Tagmentation-based whole-genome bisulfite sequencing

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Fast gapped-read alignment with Bowtie 2

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Integrative genomics viewer

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

The Sequence Alignment/Map format and SAMtools

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Anchored multiplex PCR for targeted next-generation sequencing.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5861650

Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases

13 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29562890

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-018-4561-9

1 reference

1 May 2018

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-018-4561-9

PMCID

5861650

1 reference

1 May 2018

PubMed ID

29562890

1 reference

1 May 2018