Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts. (Q51553391)

7 April 2018

title

Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts. (English)

1 reference

7 April 2018

0 references

Adam M Szalkowski

1

1 reference

7 April 2018

Christoph D Schmid

series ordinal

2

1 reference

7 April 2018

publication date

8 November 2010

1 reference

7 April 2018

Briefings in Bioinformatics

published in

1 reference

7 April 2018

volume

12

1 reference

7 April 2018

issue

6

1 reference

7 April 2018

page(s)

626-633

1 reference

7 April 2018

High-resolution profiling of histone methylations in the human genome

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Genome-wide mapping of in vivo protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

ChIP-seq: advantages and challenges of a maturing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

BayesPeak: Bayesian analysis of ChIP-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

ChIP-Seq data reveal nucleosome architecture of human promoters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Computation for ChIP-seq and RNA-seq studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Introduction into the analysis of high-throughput-sequencing based epigenome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Evaluation of algorithm performance in ChIP-seq peak detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Diversity and complexity in DNA recognition by transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

ChIP-seq accurately predicts tissue-specific activity of enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Development and validation of a T7 based linear amplification for genomic DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

GeneTrack--a genomic data processing and visualization framework.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

MER41 repeat sequences contain inducible STAT1 binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Bootstrap Methods: Another Look at the Jackknife

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Towards a rigorous assessment of systems biology models: the DREAM3 challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Assessing computational tools for the discovery of transcription factor binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

Limitations and potentials of current motif discovery algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ068

21 January 2018

Identifiers

DOI

10.1093/BIB/BBQ068

1 reference

7 April 2018

journals/bib/SzalkowskiS11

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

7 April 2018