CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins. (Q51050168)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28076807%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

title

CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins (English)

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9 April 2020

1

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9 April 2020

Rahul K Das

2

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9 April 2020

author name string

James N Ahad

3

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9 April 2020

Mary O G Richardson

4

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9 April 2020

Rohit V Pappu

5

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9 April 2020

language of work or name

English

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publication date

1 January 2017

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9 April 2020

number of pages

6

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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9 April 2020

volume

112

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9 April 2020

issue

1

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9 April 2020

page(s)

16-21

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Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe

9 April 2020

cites work

1 reference

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GADIS: Algorithm for designing sequences to achieve target secondary structure profiles of intrinsically disordered proteins.

22 May 2018

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Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein

22 May 2018

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A collection of intrinsic disorder characterizations from eukaryotic proteomes

22 May 2018

1 reference

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Cryptic sequence features within the disordered protein p27Kip1 regulate cell cycle signaling

22 May 2018

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Phase separation in biology; functional organization of a higher order

22 May 2018

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Hydrodynamic Radii of Intrinsically Disordered Proteins Determined from Experimental Polyproline II Propensities

22 May 2018

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Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck.

22 May 2018

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Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation.

22 May 2018

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Relating sequence encoded information to form and function of intrinsically disordered proteins

22 May 2018

1 reference

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Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles

22 May 2018

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Intrinsically disordered proteins in cellular signalling and regulation.

22 May 2018

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Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells

22 May 2018

1 reference

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MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

22 May 2018

1 reference

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UniProt: a hub for protein information

22 May 2018

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Classification of intrinsically disordered regions and proteins

22 May 2018

1 reference

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A quantitative measure for protein conformational heterogeneity

22 May 2018

1 reference

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Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues

22 May 2018

1 reference

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Evolutionary conservation of the polyproline II conformation surrounding intrinsically disordered phosphorylation sites

22 May 2018

1 reference

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Folding and binding of an intrinsically disordered protein: fast, but not 'diffusion-limited'.

22 May 2018

1 reference

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Diverse functional manifestations of intrinsic structural disorder in molecular chaperones.

22 May 2018

1 reference

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A core subunit of Polycomb repressive complex 1 is broadly conserved in function but not primary sequence

22 May 2018

1 reference

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Structural disorder in eukaryotes

22 May 2018

1 reference

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Reduction in structural disorder and functional complexity in the thermal adaptation of prokaryotes

22 May 2018

1 reference

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From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Sequence determinants of compaction in intrinsically disordered proteins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Net charge per residue modulates conformational ensembles of intrinsically disordered proteins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Structure of the BH3 domains from the p53-inducible BH3-only proteins Noxa and Puma in complex with Mcl-1

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

DisProt: the Database of Disordered Proteins

22 May 2018

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Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions

22 May 2018

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Polyproline II propensities from GGXGG peptides reveal an anticorrelation with beta-sheet scales

22 May 2018

1 reference

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IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Host-guest scale of left-handed polyproline II helix formation.

22 May 2018

1 reference

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Sequence complexity profiles of prokaryotic genomic sequences: a fast algorithm for calculating linguistic complexity

22 May 2018

1 reference

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Natively unfolded proteins: a point where biology waits for physics

22 May 2018

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Sequence Determinants of the Conformational Properties of an Intrinsically Disordered Protein Prior to and upon Multisite Phosphorylation.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Sequence- and Temperature-Dependent Properties of Unfolded and Disordered Proteins from Atomistic Simulations.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

NMR characterization of long-range order in intrinsically disordered proteins.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Simplified amino acid alphabets for protein fold recognition and implications for folding.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

Assembly of microtubule-associated protein tau into Alzheimer-like filaments induced by sulphated glycosaminoglycans.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5232785

10.1016/J.BPJ.2016.11.3200

14 August 2018

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9 April 2020

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