Polyproline II propensities from GGXGG peptides reveal an anticorrelation with beta-sheet scales (Q34212739)

31 July 2017

Polyproline II propensities from GGXGG peptides reveal an anticorrelation with beta-sheet scales (English)

1 reference

31 July 2017

Zhengshuang Shi

1

1 reference

31 July 2017

Kang Chen

2

1 reference

31 July 2017

Zhigang Liu

3

1 reference

31 July 2017

Angela Ng

4

1 reference

31 July 2017

W Clay Bracken

5

1 reference

31 July 2017

Neville R Kallenbach

6

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31 July 2017

language of work or name

English

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publication date

5 December 2005

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Proceedings of the National Academy of Sciences of the United States of America

31 July 2017

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31 July 2017

102

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31 July 2017

17964-17968

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31 July 2017

50

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Neighbor effect on PPII conformation in alanine peptides

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

The polyproline II conformation in short alanine peptides is noncooperative

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Reassessing random-coil statistics in unfolded proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Origin of the neighboring residue effect on peptide backbone conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

UV Raman demonstrates that alpha-helical polyalanine peptides melt to polyproline II conformations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Preferred peptide backbone conformations in the unfolded state revealed by the structure analysis of alanine-based (AXA) tripeptides in aqueous solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Unfolded state of polyalanine is a segmented polyproline II helix.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Host-guest scale of left-handed polyproline II helix formation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

The pentapeptide GGAGG has PII conformation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of phi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

A new perspective on unfolded proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Is polyproline II a major backbone conformation in unfolded proteins?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Polyproline II structure in a sequence of seven alanine residues.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Conformations of amino acids in proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Are denatured proteins ever random coils?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

The "random-coil" state of proteins: comparison of database statistics and molecular simulations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

A survey of left-handed polyproline II helices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

Conservation of polyproline II helices in homologous proteins: implications for structure prediction by model building

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1312395

5 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Dihedral angles of trialanine in D2O determined by combining FTIR and polarized visible Raman spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

The conformation of tetraalanine in water determined by polarized Raman, FT-IR, and VCD spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Vibrational Raman optical activity characterization of poly(l-proline) II helix in alanine oligopeptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Polyproline II helix is the preferred conformation for unfolded polyalanine in water.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Role of solvent in determining conformational preferences of alanine dipeptide in water.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Existence of specific "folds" in polyproline II ensembles of an "unfolded"alanine peptide detected by molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Left-handed polyproline II helices commonly occur in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Properties of polyproline II, a secondary structure element implicated in protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Persistence of native-like topology in a denatured protein in 8 M urea

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Are proteins made from a limited parts list?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Is polyproline II helix the killer conformation? a raman optical activity study of the amyloidogenic prefibrillar intermediate of human lysozyme 1 1Edited by A. R. Fersht

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507124102

Circular dichroism of poly-L-proline in an unordered conformation

21 January 2018

1 reference

12 December 2020

Two-dimensional infrared spectroscopy of the alanine dipeptide in aqueous solution

1 reference

12 December 2020

Poly(pro)II helices in globular proteins: identification and circular dichroic analysis

1 reference

12 December 2020

Molecular dynamics simulations of polypeptide conformations in water: A comparison of alpha, beta, and poly(pro)II conformations

1 reference

12 December 2020

New chain conformations of poly(glutamic acid) and polylysine

1 reference

12 December 2020

UV resonance Raman determination of polyproline II, extended 2.5(1)-helix, and beta-sheet Psi angle energy landscape in poly-L-lysine and poly-L-glutamic acid

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0507124102

1 reference

31 July 2017

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31 July 2017

1 reference