Protein remote homology detection by combining Chou's distance-pair pseudo amino acid composition and principal component analysis. (Q50927764)

25 March 2018

title

Protein remote homology detection by combining Chou's distance-pair pseudo amino acid composition and principal component analysis. (English)

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25 March 2018

principal component analysis

main subject

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author name string

Bin Liu

series ordinal

1

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25 March 2018

Junjie Chen

series ordinal

2

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25 March 2018

Xiaolong Wang

series ordinal

3

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25 March 2018

publication date

21 April 2015

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25 March 2018

Molecular Genetics and Genomics

published in

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25 March 2018

volume

290

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25 March 2018

issue

5

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25 March 2018

page(s)

1919-1931

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25 March 2018

https://scigraph.springernature.com/pub.10.1007/s00438-015-1044-4

exact match

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cites work

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21 January 2018

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21 January 2018

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21 January 2018

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GOASVM: a subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition.

21 January 2018

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Protein ranking: from local to global structure in the protein similarity network

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Using ensemble SVM to identify human GPCRs N-linked glycosylation sites based on the general form of Chou's PseAAC.

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iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition

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Remote protein homology detection using recurrence quantification analysis and amino acid physicochemical properties.

21 January 2018

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SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition

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Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

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Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo-amino acid composition

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Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies

21 January 2018

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PECM: prediction of extracellular matrix proteins using the concept of Chou's pseudo amino acid composition.

21 January 2018

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PSNO: predicting cysteine S-nitrosylation sites by incorporating various sequence-derived features into the general form of Chou's PseAAC.

21 January 2018

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Predict protein structural class for low-similarity sequences by evolutionary difference information into the general form of Chou's pseudo amino acid composition.

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Molecular science for drug development and biomedicine

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The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism

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An extension of Chou's graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways

21 January 2018

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The pH-triggered conversion of the PrP(c) to PrP(sc.).

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Characterization by NMR and molecular modeling of the binding of polyisoprenols and polyisoprenyl recognition sequence peptides: 3D structure of the complexes reveals sites of specific interactions

21 January 2018

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NMR studies on how the binding complex of polyisoprenol recognition sequence peptides and polyisoprenols can modulate membrane structure

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Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

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3D structural conformation and functional domains of polysialyltransferase ST8Sia IV required for polysialylation of neural cell adhesion molecules

21 January 2018

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Identifying GPCRs and their types with Chou's pseudo amino acid composition: an approach from multi-scale energy representation and position specific scoring matrix

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Supersecondary structure prediction using Chou's pseudo amino acid composition

21 January 2018

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Predicting peroxidase subcellular location by hybridizing different descriptors of Chou' pseudo amino acid patterns.

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NMR study of the preferred membrane orientation of polyisoprenols (dolichol) and the impact of their complex with polyisoprenyl recognition sequence peptides on membrane structure

21 January 2018

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iMiRNA-PseDPC: microRNA precursor identification with a pseudo distance-pair composition approach

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Remote homology detection: a motif based approach

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COMA server for protein distant homology search

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Impacts of bioinformatics to medicinal chemistry

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Using distances between Top-n-gram and residue pairs for protein remote homology detection

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Protein binding site prediction by combining hidden Markov support vector machine and profile-based propensities.

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Exploiting three kinds of interface propensities to identify protein binding sites

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Signal propagation in protein interaction network during colorectal cancer progression

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12 December 2020

MRFalign: protein homology detection through alignment of Markov random fields

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iCTX-type: a sequence-based predictor for identifying the types of conotoxins in targeting ion channels

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12 December 2020

Graphic rules in steady and non-steady state enzyme kinetics

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12 December 2020

10.1007/S00438-015-1044-4

Identifiers

DOI

1 reference

25 March 2018

PubMed ID

25896721

1 reference

25 March 2018