Modeling the adaptive immune system: predictions and simulations. (Q48372980)

11 February 2018

title

Modeling the adaptive immune system: predictions and simulations. (English)

1 reference

11 February 2018

main subject

adaptive immune system

1 reference

4

1 reference

11 February 2018

Morten Nielsen

5

1 reference

11 February 2018

Ole Lund

object named as

Ole Lund

2

0 references

Claus Lundegaard

1

object named as

Claus Lundegaard

1 reference

11 February 2018

Can Kesmir

3

object named as

Can Kesmir

1 reference

11 February 2018

language of work or name

English

0 references

publication date

28 November 2007

1 reference

11 February 2018

published in

Bioinformatics

1 reference

11 February 2018

volume

23

1 reference

11 February 2018

page(s)

3265-3275

1 reference

11 February 2018

issue

24

1 reference

11 February 2018

The ABCs of immunology: structure and function of TAP, the transporter associated with antigen processing

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of binding to MHC class I molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Predictive estimation of protein linear epitopes by using the program PEOPLE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

An in silico method using an epitope motif database for predicting the location of antigenic determinants on proteins in a structural context.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Improved prediction of signal peptides: SignalP 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Benchmarking B cell epitope prediction: underperformance of existing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

JenPep: a database of quantitative functional peptide data for immunology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Different Dynamics of CD4+ and CD8+ T Cell Responses During and After Acute Lymphocytic Choriomeningitis Virus Infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Quantification of T-cell dynamics: from telomeres to DNA labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of promiscuous peptides that bind HLA class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Antibodies, viruses and vaccines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

When three is not a crowd: a Crossregulation model of the dynamics and repertoire selection of regulatory CD4+ T cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Antigen presentation by MHC class II molecules: invariant chain function, protein trafficking, and the molecular basis of diverse determinant capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Cancer immunotherapy, mathematical modeling and optimal control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Peptide length-based prediction of peptide-MHC class II binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Identification of immunodominant regions among promiscuous HLA-DR-restricted CD4+ T-cell epitopes on the tumor antigen MAGE-3

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

21 January 2018

Support-vector networks

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Epitope mapping and topographic analysis of VAR2CSA DBL3X involved in P. falciparum placental sequestration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Understanding the mechanisms and limitations of immune control of HIV.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Harnessing bioinformatics to discover new vaccines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Genetic divergence of the rhesus macaque major histocompatibility complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Immunomics: discovering new targets for vaccines and therapeutics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Predictions of the secondary structure and antigenicity of human and bovine tropoelastins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Integrated modeling of the major events in the MHC class I antigen processing pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

EpiJen: a server for multistep T cell epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Decline in excision circles requires homeostatic renewal or homeostatic death of naive T cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

The mapping and reconstitution of a conformational discontinuous B-cell epitope of HIV-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Cellular peptide composition governed by major histocompatibility complex class I molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Efficient MHC class I-independent amino-terminal trimming of epitope precursor peptides in the endoplasmic reticulum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A cellular calculus for signal integration by T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Naturally processed HLA class II peptides reveal highly conserved immunogenic flanking region sequence preferences that reflect antigen processing rather than peptide-MHC interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Two complementary methods for predicting peptides binding major histocompatibility complex molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

SiteLight: binding-site prediction using phage display libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Increased cell division but not thymic dysfunction rapidly affects the T-cell receptor excision circle content of the naive T cell population in HIV-1 infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Thymic output: a bad TREC record

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Measurement of T-cell kinetics: recent methodologic advances

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Identifying HLA supertypes by learning distance functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of protein antigenic determinants from amino acid sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

MIMOX: a web tool for phage display based epitope mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Actin surface structure revealed by antibody imprints: evaluation of phage-display analysis of anti-actin antibodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Learning MHC I--peptide binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A combined transmembrane topology and signal peptide prediction method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of MHC class II binders using the ant colony search strategy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

AAindex: amino acid index database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of proteasome cleavage motifs by neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A systematic approach to vaccine complexity using an automaton model of the cellular and humoral immune system. I. Viral characteristics and polarized responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Two distinct HLA-A*0101-specific submotifs illustrate alternative peptide binding modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Immunoinformatics comes of age

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

CEP: a conformational epitope prediction server.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

An algorithm for the prediction of proteasomal cleavages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Improved method for predicting linear B-cell epitopes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

IMGT, the international ImMunoGeneTics information system: a standardized approach for immunogenetics and immunoinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A simplified representation of protein conformations for rapid simulation of protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

The generation of antibody diversity through somatic hypermutation and class switch recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Discovery of cancer vaccination protocols with a genetic algorithm driving an agent based simulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Antigen presentation and the ubiquitin-proteasome system in host-pathogen interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

T-cell epitope repertoire as predicted from human and viral genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Definition of supertypes for HLA molecules using clustering of specificity matrices.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Two novel T cell epitope prediction algorithms based on MHC-binding motifs; comparison of predicted and published epitopes from Mycobacterium tuberculosis and HIV protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Mimotopes: realization of an unlikely concept

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Dominant epitopes and allergic cross-reactivity: complex formation between a Fab fragment of a monoclonal murine IgG antibody and the major allergen from birch pollen Bet v 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Rapid turnover of T lymphocytes in SIV-infected rhesus macaques.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Increased turnover of T lymphocytes in HIV-1 infection and its reduction by antiretroviral therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Discontinuous epitope prediction based on mimotope analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Modelling vaccination schedules for a cancer immunoprevention vaccine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A new method for mapping discontinuous antibody epitopes to reveal structural features of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of MHC class II binding peptides based on an iterative learning model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Antigenic determinants in proteins coincide with surface regions accessible to large probes (antibody domains).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

PAProC: a prediction algorithm for proteasomal cleavages available on the WWW.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

8 Predicting location of continuous epitopes in proteins from their primary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

The immune epitope database and analysis resource: from vision to blueprint

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A community resource benchmarking predictions of peptide binding to MHC-I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Bioinformatics for study of autoimmunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

SYFPEITHI: database for MHC ligands and peptide motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Modelling the human immune system by combining bioinformatics and systems biology approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of MHC class I binding peptides using profile motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Functional antigen-independent synapses formed between T cells and dendritic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Modeling deuterated glucose labeling of T-lymphocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Predicting proteasomal cleavage sites: a comparison of available methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of well-conserved HIV-1 ligands using a matrix-based algorithm, EpiMatrix.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Combining computer algorithms with experimental approaches permits the rapid and accurate identification of T cell epitopes from defined antigens

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

3D-Epitope-Explorer (3DEX): localization of conformational epitopes within three-dimensional structures of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

A model for simulating cognate recognition and response in the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Selection and combination of machine learning classifiers for prediction of linear B-cell epitopes on proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Machine learning approaches for prediction of linear B-cell epitopes on proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Two new proteases in the MHC class I processing pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Peptide binding specificity of major histocompatibility complex class I resolved into an array of apparently independent subspecificities: quantitation by peptide libraries and improved prediction of binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Measuring the accuracy of diagnostic systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

SARS CTL vaccine candidates; HLA supertype-, genome-wide scanning and biochemical validation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Mapping a neutralizing epitope on the SARS coronavirus spike protein: computational prediction based on affinity-selected peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Quantitative analysis of prion-protein degradation by constitutive and immuno-20S proteasomes indicates differences correlated with disease susceptibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

New insights into V(D)J recombination and its role in the evolution of the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Methods and protocols for prediction of immunogenic epitopes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Mapping Epitope Structure and Activity: From One-Dimensional Prediction to Four-Dimensional Description of Antigenic Specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

CTL epitopes for influenza A including the H5N1 bird flu; genome-, pathogen-, and HLA-wide screening.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Assembly of MHC class I molecules within the endoplasmic reticulum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Signal peptide prediction based on analysis of experimentally verified cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Transporter Associated with Antigen Processing Preselection of Peptides Binding to the MHC: A Bioinformatic Evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Physicochemical explanation of peptide binding to HLA-A*0201 major histocompatibility complex: A three-dimensional quantitative structure-activity relationship study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Changes in thymic function with age and during the treatment of HIV infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM471

Expression and deletion analysis of the Trypanosoma brucei rhodesiense cysteine protease in Escherichia coli

21 January 2018

1 reference

12 December 2020

ADEPT: a computer program for prediction of protein antigenic determinants.

1 reference

12 December 2020

Definition of specific peptide motifs for four major HLA-A alleles

1 reference

12 December 2020

MAPPP: MHC class I antigenic peptide processing prediction.

1 reference

12 December 2020

Location of 'continuous' antigenic determinants in the protruding regions of proteins

1 reference

12 December 2020

Stochastic Model of T Cell Proliferation: A Calculus Revealing IL-2 Regulation of Precursor Frequencies, Cell Cycle Time, and Survival

1 reference

12 December 2020

Estimating average cellular turnover from 5–bromo–2'–deoxyuridine (BrdU) measurements

1 reference

12 December 2020

Analysis of vaccine's schedules using models

1 reference

12 December 2020

Predicting antigenic determinants in proteins: looking for unidimensional solutions to a three-dimensional problem?

1 reference

12 December 2020

Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

1 reference

12 December 2020

T cell renewal rates, telomerase, and telomere length shortening.

1 reference

12 December 2020

Structural evidence for recognition of a single epitope by two distinct antibodies

1 reference

12 December 2020

Exact prediction of a natural T cell epitope

1 reference

12 December 2020

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

1 reference

12 December 2020

Customized versus universal scoring functions: application to class I MHC-peptide binding free energy predictions

1 reference

12 December 2020

A computer program for predicting protein antigenic determinants

1 reference

12 December 2020

Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules

1 reference

12 December 2020

The antigenic index: a novel algorithm for predicting antigenic determinants.

1 reference

12 December 2020

BEPITOPE: predicting the location of continuous epitopes and patterns in proteins

1 reference

12 December 2020

Correlation between the location of antigenic sites and the prediction of turns in proteins

1 reference

12 December 2020

Hidden Markov models for sequence analysis: extension and analysis of the basic method

1 reference

12 December 2020

Methods for prediction of peptide binding to MHC molecules: a comparative study.

1 reference

12 December 2020

Different views of protein antigenicity

1 reference

12 December 2020

HLA supertypes and supermotifs: a functional perspective on HLA polymorphism

1 reference

12 December 2020

A sequence pattern common to T cell epitopes

1 reference

12 December 2020

Toward the quantitative prediction of T-cell epitopes: QSAR studies on peptides having affinity with the class I MHC molecular HLA-A*0201

1 reference

12 December 2020

Prediction of immunogenicity for therapeutic proteins: state of the art.

1 reference

12 December 2020

10.1093/BIOINFORMATICS/BTM471

Identifiers

DOI

1 reference

11 February 2018

journals/bioinformatics/LundegaardLKBN07

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_zbp7q6imrfgklixo2thivrup5i

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/zbp7q6imrfgklixo2thivrup5i

24 November 2022

mapped directly with Wikidata item

0 references

1 reference

11 February 2018