Modeling sites of RNA editing as a fifth nucleotide state reveals progressive loss of edited sites from angiosperm mitochondria (Q46947712)

26 December 2017

title

Modeling sites of RNA editing as a fifth nucleotide state reveals progressive loss of edited sites from angiosperm mitochondria (English)

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26 December 2017

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Jeffrey P Mower

1

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26 December 2017

publication date

16 October 2007

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26 December 2017

Molecular Biology and Evolution

published in

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26 December 2017

volume

25

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26 December 2017

issue

1

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26 December 2017

page(s)

52-61

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26 December 2017

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

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Effects of RNA editing and gene processing on phylogenetic reconstruction.

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Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants

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Different patterns in the recognition of editing sites in plant mitochondria

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RNA editing in plant mitochondria

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On the evolution of RNA editing

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Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA

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Evolutionary trees from DNA sequences: A maximum likelihood approach

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Intron loss from the NADH dehydrogenase subunit 4 gene of lettuce mitochondrial DNA: evidence for homologous recombination of a cDNA intermediate.

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RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

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RNA editing in the mitochondria of a conifer

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Functions and mechanisms of RNA editing

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RNA editing in wheat mitochondria results in the conservation of protein sequences

21 January 2018

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The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana

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Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta

21 January 2018

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RNA editing in plant mitochondria

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The genes encoding subunit 3 of NADH dehydrogenase and ribosomal protein S12 are co-transcribed and edited in Pinus sylvestris (L.) mitochondria.

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HyPhy: hypothesis testing using phylogenies

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A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts

21 January 2018

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RNA editing has been lost in the mitochondrial cox3 and rps13 mRNAs in Asparagales.

21 January 2018

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RNA editing in gymnosperms and its impact on the evolution of the mitochondrial coxI gene.

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Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

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Mutation pressure and the evolution of organelle genomic architecture

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PREP-Mt: predictive RNA editor for plant mitochondrial genes

21 January 2018

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Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris.

21 January 2018

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Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.

21 January 2018

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Computational analysis of RNA editing sites in plant mitochondrial genomes reveals similar information content and a sporadic distribution of editing sites

21 January 2018

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An in vitro RNA editing system from cauliflower mitochondria: editing site recognition parameters can vary in different plant species

21 January 2018

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The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

21 January 2018

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A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing.

21 January 2018

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Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae

21 January 2018

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RNA editing in the cox3 mRNA of Magnolia is more extensive than in other dicot or monocot plants.

21 January 2018

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RNA Editing and Phylogenetic Reconstruction in Two Monocot Mitochondrial Genes

21 January 2018

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MODELTEST: testing the model of DNA substitution

21 January 2018

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Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes

21 January 2018

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Striking differences in RNA editing requirements to express the rps4 gene in magnolia and sunflower mitochondria.

21 January 2018

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Distribution of RNA editing sites in Oenothera mitochondrial mRNAs and rRNAs

21 January 2018

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Accelerated evolution of sites undergoing mRNA editing in plant mitochondria and chloroplasts.

21 January 2018

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RNA editing in plant organelles: machinery, physiological function and evolution

21 January 2018

1 reference

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The PPR motif - a TPR-related motif prevalent in plant organellar proteins

21 January 2018

1 reference

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Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM226

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM226

Evolution of the angiosperms: calibrating the family tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM226

A hypothesis on the identification of the editing enzyme in plant organelles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSM226

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSM226

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26 December 2017

PubMed ID

17940211

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26 December 2017