Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes (Q28960328)

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Tory A. Hendry

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Ruiqi Li

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David W. Taylor

5

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Michael J. Issa

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Alexander J. Ronen

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Mona L. Vekaria

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Adam M. White

Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

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language of work or name

English

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publication date

1 November 2006

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published in

Taxon

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volume

55

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issue

4

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page(s)

837–856

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cites work

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Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

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Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia, the world's largest flower

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The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: a comparative analysis in mosses

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Widespread horizontal transfer of mitochondrial genes in flowering plants.

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Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms

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Effects of RNA editing and gene processing on phylogenetic reconstruction.

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Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

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Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

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Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

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Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants

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Phylogenetic Relationships among the Mosses Based on Heterogeneous Bayesian Analysis of Multiple Genes from Multiple Genomic Compartments

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Paleobotanical evidence on the early radiation of nonmagnoliid dicotyledons

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Darwin's abominable mystery: Insights from a supertree of the angiosperms

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Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales

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Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences

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A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values

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Distribution of introns in the mitochondrial gene nad1 in land plants: phylogenetic and molecular evolutionary implications

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Cretaceous angiosperm pollen of the Atlantic coastal plain and its evolutionary significance

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Phylogenetic relationships of land plants using mitochondrial small-subunit rDNA sequences

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The Ancestral Ecology of Angiosperms: Emerging Perspectives from Extant Basal Lineages

31 March 2020

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Floral evidence for Cretaceous chloranthoid angiosperms

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Early Angiosperm Diversification: The Diversity of Pollen Associated with Angiosperm Reproductive Structures in Early Cretaceous Floras from Portugal

31 March 2020

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Fossil evidence of water lilies (Nymphaeales) in the Early Cretaceous

31 March 2020

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Araceae from the Early Cretaceous of Portugal: evidence on the emergence of monocotyledons

31 March 2020

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Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

31 March 2020

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Analysis of Acorus calamus chloroplast genome and its phylogenetic implications.

31 March 2020

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Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

31 March 2020

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Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants.

31 March 2020

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The evolutionary split of Pinaceae from other conifers: evidence from an intron loss and a multigene phylogeny.

31 March 2020

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

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Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes

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Plant mitochondrial nucleic acid sequences as a tool for phylogenetic analysis

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Angiosperm phylogeny based on matK sequence information

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Phylogeny of Basal Eudicots Based on Three Molecular Data Sets: atpB, rbcL, and 18s Nuclear Ribosomal DNA Sequences

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Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication

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The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

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RNA editing in hornwort chloroplasts makes more than half the genes functional

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Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

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The Origin and Affinities of the Ceratophyllaceae

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Molecular evolution and phylogenetic utility of the petD group II intron: a case study in basal angiosperms

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RNA editing in bryophytes and a molecular phylogeny of land plants

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Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort

31 March 2020

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The Root of Angiosperm Phylogeny Inferred from Duplicate Phytochrome Genes

31 March 2020

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The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small

31 March 2020

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Molecular data place Hydnoraceae with Aristolochiaceae

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Multigene analyses identify the three earliest lineages of extant flowering plants.

31 March 2020

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Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae

31 March 2020

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MODELTEST: testing the model of DNA substitution

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The gain of three mitochondrial introns identifies liverworts as the earliest land plants.

31 March 2020

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The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

31 March 2020

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Was the ANITA rooting of the angiosperm phylogeny affected by long-branch attraction? Amborella, Nymphaeales, Illiciales, Trimeniaceae, and Austrobaileya

31 March 2020

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Phylogeny of early land plants: insights from genes and genomes

31 March 2020

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Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes

31 March 2020

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Circumscription and phylogeny of the Laurales: evidence from molecular and morphological data

31 March 2020

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Shifts in diversification rate with the origin of angiosperms

31 March 2020

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Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin

31 March 2020

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Phylogenetic analysis of Magnoliales and Myristicaceae based on multiple data sets: implications for character evolution

31 March 2020

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Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

31 March 2020

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The Probable Growth Habit of the Earliest Flowering Plants

31 March 2020

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Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

31 March 2020

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Plant mitochondrial RNA editing

31 March 2020

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Archaefructaceae, a new basal angiosperm family

31 March 2020

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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

31 March 2020

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

31 March 2020

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Cuticle Evolution in Early Cretaceous Angiosperms From the Potomac Group of Virginia and Maryland

31 March 2020

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Teixeiria lusitanica, a new fossil flower from the Early Cretaceous of Portugal with affinities to Ranunculales

31 March 2020

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Ultrastructure of Lower Cretaceous Angiosperm Pollen and the Origin and Early Evolution of Flowering Plants

31 March 2020

1 reference

Phylogeny and divergence times in Pinaceae: evidence from three genomes.

31 March 2020

1 reference

Incongruence between primary sequence data and the distribution of a mitochondrial atp1 group II intron among ferns and horsetails

31 March 2020

1 reference

Horizontal gene transfer from flowering plants to Gnetum

31 March 2020

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The root of the angiosperms revisited

31 March 2020

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