Stereospecific interactions of proline residues in protein structures and complexes (Q44543301)

4 December 2017

Stereospecific interactions of proline residues in protein structures and complexes (English)

1 reference

4 December 2017

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Rajasri Bhattacharyya

series ordinal

1

1 reference

PubMed ID

12909019

4 December 2017

Pinak Chakrabarti

series ordinal

2

1 reference

PubMed ID

12909019

4 December 2017

language of work or name

English

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publication date

1 August 2003

1 reference

Journal of Molecular Biology

4 December 2017

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4 December 2017

331

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4 December 2017

4

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4 December 2017

925-940

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The interrelationships of side-chain and main-chain conformations in proteins.

4 December 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

A revised set of potentials for beta-turn formation in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Analysis and prediction of the different types of beta-turn in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Amino acid preferences for specific locations at the ends of alpha helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Prediction of protein conformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

C--H...O hydrogen bond involving proline residues in alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Packing of aromatic rings against tryptophan residues in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Aromatic-aromatic interactions in and around alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Geometry of interaction of the histidine ring with other planar and basic residues.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Hydrogen bonds with pi-acceptors in proteins: frequencies and role in stabilizing local 3D structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

C-H...pi-interactions in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Quantifying the accessible surface area of protein residues in their local environment.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Occurrence and role of cis peptide bonds in protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Influence of proline residues on protein conformation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Side-chain effects on peptidyl-prolyl cis/trans isomerisation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

An analysis of side chain interactions and pair correlations within antiparallel beta-sheets: the differences between backbone hydrogen-bonded and non-hydrogen-bonded residue pairs.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Determinants of strand register in antiparallel beta-sheets of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Hydrogen bonding in globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Stability of alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

The relationship between sequence and structure in elementary folding units

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Helix signals in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Sequence and structure patterns in proteins from an analysis of the shortest helices: implications for helix nucleation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Side-chain structures in the first turn of the α-helix 1 1Edited by J. M. Thornton

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

The structure and function of proline-rich regions in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

The antibacterial peptide pyrrhocoricin inhibits the ATPase actions of DnaK and prevents chaperone-assisted protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Dissecting protein-protein recognition sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Cyclophilin: a specific cytosolic binding protein for cyclosporin A

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Catalysis of protein folding by prolyl isomerase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structures of cyclophilin-ligand complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Domain repertoires as a tool to derive protein recognition rules.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Random peptide libraries: a source of specific protein binding molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Molecular interaction between the Strep-tag affinity peptide and its cognate target, streptavidin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structural origins of high-affinity biotin binding to streptavidin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Assessing the role of tryptophan residues in the binding site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

p53, the cellular gatekeeper for growth and division

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Molecular characterization of the hdm2-p53 interaction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Protein interaction sites obtained via sequence homology. The site of complexation of electron transfer partners of cytochrome c revealed by mapping amino acid substitutions onto three-dimensional protein surfaces

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Evolutionarily conserved pathways of energetic connectivity in protein families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

On the conservation of protein sequences in evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

A fast method to predict protein interaction sites from sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Anatomy of hot spots in protein interfaces

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

An evolutionary trace method defines binding surfaces common to protein families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

HOMSTRAD: a database of protein structure alignments for homologous families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

CH/pi interaction in the packing of the adenine ring in protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

CH/pi interactions in the crystal structure of class I MHC antigens and their complexes with peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

The occurrence of C-H...O hydrogen bonds in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Crystallographic evidence for C alpha-H...O=C hydrogen bonds in a collagen triple helix.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

C-H...O hydrogen bonds in beta-sheets.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Twist and shear in beta-sheets and beta-ribbons.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Strength of the Calpha H..O hydrogen bond of amino acid residues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Stabilization of local structures by pi-CH and aromatic-backbone amide interactions involving prolyl and aromatic residues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Solution structure of the SH3 domain of Src and identification of its ligand-binding site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

A hypothetical structural role for proline residues in the flanking segments of protein-protein interaction sites.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Enlarged representative set of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

The interpretation of protein structures: Estimation of static accessibility

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Crystal structure of the abl-SH3 domain complexed with a designed high-affinity peptide ligand: implications for SH3-ligand interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structure of a WW domain containing fragment of dystrophin in complex with beta-dystroglycan

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Cyclophilin A complexed with a fragment of HIV-1 gag protein: insights into HIV-1 infectious activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Mechanistic implication of crystal structures of the cyclophilin-dipeptide complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Crystal structure implies that cyclophilin predominantly catalyzes the trans to cis isomerization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structures of prolyl oligopeptidase substrate/inhibitor complexes. Use of inhibitor binding for titration of the catalytic histidine residue

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Three-dimensional structure of a peptide extending from one end of a class I MHC binding site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Crystal structures of two viral peptides in complex with murine MHC class I H-2Kb

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Three-dimensional structure of a human class II histocompatibility molecule complexed with superantigen

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structure of EVH1, a novel proline-rich ligand-binding module involved in cytoskeletal dynamics and neural function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structure of the Homer EVH1 domain-peptide complex reveals a new twist in polyproline recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Profilin binds proline-rich ligands in two distinct amide backbone orientations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structure of the profilin-poly-L-proline complex involved in morphogenesis and cytoskeletal regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Interaction of the factor XIII activation peptide with alpha -thrombin. Crystal structure of its enzyme-substrate analog complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

The methyl group of N(alpha)(Me)Arg-containing peptides disturbs the active-site geometry of thrombin, impairing efficient cleavage

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900759-9

10.1016/S0022-2836(03)00759-9

7 January 2021

Identifiers

DOI

1 reference

4 December 2017

1 reference

PubMed ID

12909019