Structural and functional partitioning of bread wheat chromosome 3B. (Q44024376)

29 November 2017

Structural and functional partitioning of bread wheat chromosome 3B. (English)

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29 November 2017

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27

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29 November 2017

Michael Alaux

16

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Frédéric Choulet

Frédéric Choulet

1

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Adriana Alberti

Adriana Alberti

2

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Jean-Marc Aury

Jean-Marc Aury

26

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Arnaud Couloux

Arnaud Couloux

9

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Julie Poulain

Julie Poulain

18

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Josquin Daron

Josquin Daron

6

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Jaroslav Doležel

23

Jaroslav Dolezel

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29 November 2017

31

Catherine Feuillet

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29 November 2017

22

Jan Safar

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29 November 2017

30

Patrick Wincker

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29 November 2017

29

Hadi Quesneville

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29 November 2017

13

Nicolas Guilhot

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29 November 2017

11

Philippe Leroy

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29 November 2017

20

Arnaud Bellec

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29 November 2017

8

Pierre Sourdille

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29 November 2017

12

Sophie Mangenot

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29 November 2017

3

Sébastien Theil

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29 November 2017

4

Natasha Glover

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29 November 2017

7

Lise Pingault

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29 November 2017

14

Jacques Le Gouis

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29 November 2017

17

Véronique Jamilloux

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29 November 2017

Valérie Barbe

5

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29 November 2017

Etienne Paux

10

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29 November 2017

Francois Balfourier

15

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29 November 2017

Céline Durand

19

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29 November 2017

Christine Gaspin

21

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29 November 2017

Jane Rogers

24

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29 November 2017

Hélène Berges

28

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29 November 2017

language of work or name

English

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publication date

1 July 2014

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29 November 2017

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29 November 2017

345

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29 November 2017

1249721

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29 November 2017

6194

1 reference

Genome plasticity a key factor in the success of polyploid wheat under domestication

29 November 2017

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Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

21 January 2018

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Evolution by gene duplication: an update

21 January 2018

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A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat

21 January 2018

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A transcriptomics resource for wheat functional genomics

21 January 2018

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Mapping translocation breakpoints using a wheat microarray

21 January 2018

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A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat.

21 January 2018

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Analysis of the bread wheat genome using whole-genome shotgun sequencing

21 January 2018

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Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

21 January 2018

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Draft genome of the wheat A-genome progenitor Triticum urartu

21 January 2018

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Assembly of large genomes using second-generation sequencing

21 January 2018

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Next-generation sequencing: The genome jigsaw

21 January 2018

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21 January 2018

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21 January 2018

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Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat

21 January 2018

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A physical map of the 1-gigabase bread wheat chromosome 3B.

21 January 2018

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A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

21 January 2018

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Genomics. Genome project standards in a new era of sequencing

21 January 2018

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Intergenic locations of rice centromeric chromatin

21 January 2018

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Total centromere size and genome size are strongly correlated in ten grass species

21 January 2018

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Kinetochore geometry defined by cohesion within the centromere.

21 January 2018

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Exploring the genetic characteristics of two recombinant inbred line populations via high-density SNP markers in maize

21 January 2018

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Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.).

21 January 2018

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Extensive variation in the density and distribution of DNA polymorphism in sorghum genomes

21 January 2018

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The map-based sequence of the rice genome

21 January 2018

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The Sorghum bicolor genome and the diversification of grasses

21 January 2018

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Insular organization of gene space in grass genomes

21 January 2018

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A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

21 January 2018

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Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays

21 January 2018

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

21 January 2018

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Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

21 January 2018

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Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat

21 January 2018

1 reference

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Evolutionary analysis of the CACTA DNA-transposon Caspar across wheat species using sequence comparison and in situ hybridization

21 January 2018

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Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa

21 January 2018

1 reference

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Comparative genetics in the grasses

21 January 2018

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Genome relationships: the grass model in current research

21 January 2018

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Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

21 January 2018

1 reference

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Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

1 reference

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Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates

21 January 2018

1 reference

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Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

21 January 2018

1 reference

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Patching gaps in plant genomes results in gene movement and erosion of colinearity

21 January 2018

1 reference

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Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

21 January 2018

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Crop genome sequencing: lessons and rationales

21 January 2018

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Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat

21 January 2018

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Solutions for a cultivated planet

21 January 2018

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TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

21 January 2018

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

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21 January 2018

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Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

21 January 2018

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SOAP2: an improved ultrafast tool for short read alignment

21 January 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

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21 January 2018

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Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome

21 January 2018

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21 January 2018

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AUGUSTUS: ab initio prediction of alternative transcripts

21 January 2018

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Computational gene annotation in new genome assemblies using GeneID.

21 January 2018

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Artemis: sequence visualization and annotation

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21 January 2018

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21 January 2018

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GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets

21 January 2018

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Structure-function analysis of the NB-ARC domain of plant disease resistance proteins.

21 January 2018

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

21 January 2018

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

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Small nuclear RNA genes transcribed by either RNA polymerase II or RNA polymerase III in monocot plants share three promoter elements and use a strategy to regulate gene expression different from that used by their dicot plant counterparts

21 January 2018

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An efficient algorithm for large-scale detection of protein families

21 January 2018

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 January 2018

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Considering transposable element diversification in de novo annotation approaches

21 January 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

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Fast gapped-read alignment with Bowtie 2

21 January 2018

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The Sequence Alignment/Map format and SAMtools

21 January 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

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MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

21 January 2018

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ACT: the Artemis Comparison Tool

21 January 2018

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MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

21 January 2018

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Circos: an information aesthetic for comparative genomics

21 January 2018

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A worldwide bread wheat core collection arrayed in a 384-well plate

21 January 2018

1 reference

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Analysis of diversity and linkage disequilibrium along chromosome 3B of bread wheat (Triticum aestivum L.).

21 January 2018

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CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping

21 January 2018

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Genetic, physical, and informatics resources for maize. On the road to an integrated map.

21 January 2018

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Reconstruction of the synthetic W7984 x Opata M85 wheat reference population

21 January 2018

1 reference

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An update of the Courtot x Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat.

21 January 2018

1 reference

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CerealsDB 2.0: an integrated resource for plant breeders and scientists

21 January 2018

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Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.).

21 January 2018

1 reference

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Targeted re-sequencing of the allohexaploid wheat exome

21 January 2018

1 reference

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TASSEL: software for association mapping of complex traits in diverse samples

21 January 2018

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BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms

21 January 2018

1 reference

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A quantitative genetic study for elucidating the contribution of glutamine synthetase, glutamate dehydrogenase and other nitrogen-related physiological traits to the agronomic performance of common wheat.

21 January 2018

1 reference

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Genetic dissection of grain yield and physical grain quality in bread wheat (Triticum aestivum L.) under water-limited environments

21 January 2018

1 reference

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Anthesis date mainly explained correlations between post-anthesis leaf senescence, grain yield, and grain protein concentration in a winter wheat population segregating for flowering time QTLs.

21 January 2018

1 reference

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QTL mapping for seedling traits in wheat grown under varying concentrations of N, P and K nutrients.

21 January 2018

1 reference

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Meta-QTL analysis of the genetic control of ear emergence in elite European winter wheat germplasm.

21 January 2018

1 reference

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Genomic distribution of quantitative trait loci for yield and yield-related traits in common wheat.

21 January 2018

1 reference

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Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution

21 January 2018

1 reference

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A unified classification system for eukaryotic transposable elements

21 January 2018

1 reference

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Mapping QTLs for nitrogen uptake in relation to the early growth of wheat (Triticum aestivum L.)

21 January 2018

1 reference

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Isolated chromosomes as a new and efficient source of DArT markers for the saturation of genetic maps

21 January 2018

1 reference

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A physical, genetic and functional sequence assembly of the barley genome

21 January 2018

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE11543

15 July 2023

Identifiers

DOI

10.1126/SCIENCE.1249721

1 reference

29 November 2017

1 reference