The origin of short transcriptional pauses (Q42597812)

3 November 2017

The origin of short transcriptional pauses (English)

1 reference

3 November 2017

Eric A Galburt

2

0 references

Stephan Grill

series ordinal

3

object named as

Stephan W Grill

1 reference

3 November 2017

1

Martin Depken

1 reference

PMCID

2717293

3 November 2017

language of work or name

English

0 references

publication date

1 March 2009

1 reference

3 November 2017

1 reference

3 November 2017

96

1 reference

3 November 2017

2189-2193

1 reference

3 November 2017

6

1 reference

Sequence heterogeneity and the dynamics of molecular motors

3 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Thermal probing of E. coli RNA polymerase off-pathway mechanisms

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Single-molecule studies of RNA polymerase: motoring along

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Transcript-assisted transcriptional proofreading

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Sequence-resolved detection of pausing by single RNA polymerase molecules.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Thermodynamic and kinetic modeling of transcriptional pausing

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Direct observation of base-pair stepping by RNA polymerase

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Thinking quantitatively about transcriptional regulation.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Transcriptional fidelity and proofreading by RNA polymerase II.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Fluctuations, pauses, and backtracking in DNA transcription

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2717293

A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19289045

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sequence-dependent kinetic model for transcription elongation by RNA polymerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19289045

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.BPJ.2008.12.3918

1 reference

3 November 2017

1 reference

3 November 2017

1 reference

PMCID

2717293