Thermodynamic and kinetic modeling of transcriptional pausing (Q34574716)

3 August 2017

title

Thermodynamic and kinetic modeling of transcriptional pausing (English)

1 reference

Correction for Tadigotla et al., Thermodynamic and kinetic modeling of transcriptional pausing

3 August 2017

corrigendum / erratum

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6

Evgeny Nudler

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Richard H. Ebright

object named as

Richard H Ebright

5

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author name string

Vasisht R Tadigotla

1

1 reference

3 August 2017

Dáibhid O Maoiléidigh

2

1 reference

3 August 2017

Anirvan M Sengupta

3

1 reference

3 August 2017

Vitaly Epshtein

4

1 reference

3 August 2017

Andrei E Ruckenstein

7

1 reference

3 August 2017

publication date

13 March 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

3 August 2017

language of work or name

English

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published in

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3 August 2017

volume

103

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3 August 2017

issue

12

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3 August 2017

page(s)

4439-4444

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Direct observation of base-pair stepping by RNA polymerase

3 August 2017

cites work

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Simultaneous, coincident optical trapping and single-molecule fluorescence

7 July 2018

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Thinking quantitatively about transcriptional regulation.

7 July 2018

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Regulation of RNA polymerase through the secondary channel.

7 July 2018

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Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

7 July 2018

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Single-molecule transition-state analysis of RNA folding

7 July 2018

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Transcription termination and anti-termination in E. coli

7 July 2018

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Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

7 July 2018

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Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

7 July 2018

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RNA polymerase clamps down

7 July 2018

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Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

7 July 2018

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Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

7 July 2018

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RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

7 July 2018

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A structural model of transcription elongation

7 July 2018

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Structural organization of the RNA polymerase-promoter open complex

7 July 2018

1 reference

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Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

7 July 2018

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Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

7 July 2018

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Insights into Escherichia coli RNA polymerase structure from a combination of x-ray and electron crystallography

7 July 2018

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Spatial organization of transcription elongation complex in Escherichia coli

7 July 2018

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Motion of RNA polymerase along DNA: a stochastic model

7 July 2018

1 reference

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Regulation of the elongation-termination decision at intrinsic terminators by antitermination protein N of phage λ 1 1Edited by K. Yamamoto

7 July 2018

1 reference

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Basic mechanisms of transcript elongation and its regulation

7 July 2018

1 reference

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RNA polymerase slides home: pause and termination site recognition

7 July 2018

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A model for the mechanism of polymerase translocation

7 July 2018

1 reference

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Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism

7 July 2018

1 reference

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Analysis of RNA chain elongation and termination by Saccharomyces cerevisiae RNA polymerase III.

7 July 2018

1 reference

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RNA chaperones and the RNA folding problem

7 July 2018

1 reference

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Translation activates the paused transcription complex and restores transcription of the trp operon leader region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450190

Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450190

A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli

7 July 2018

1 reference

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The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective

7 July 2018

1 reference

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An Integrated Model of the Transcription Complex in Elongation, Termination, and Editing

7 July 2018

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Stability of Escherichia coli transcription complexes near an intrinsic terminator

21 January 2018

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The structural mechanism of translocation and helicase activity in T7 RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0600508103

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0600508103

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0600508103

Force and Velocity Measured for Single Molecules of RNA Polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0600508103

A Ratchet Mechanism of Transcription Elongation and Its Control

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0600508103

Function of transcription cleavage factors GreA and GreB at a regulatory pause site

21 January 2018

1 reference

12 December 2020

Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation

1 reference

12 December 2020

RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides

1 reference

12 December 2020

The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination

1 reference

12 December 2020

Mechanism of intrinsic transcription termination and antitermination

1 reference

12 December 2020

Determinants of the stability of transcription elongation complexes: interactions of the nascent RNA with the DNA template and the RNA polymerase

1 reference

12 December 2020

Sequence-dependent kinetic model for transcription elongation by RNA polymerase

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0600508103

1 reference

3 August 2017

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3 August 2017

1 reference