Efficient use of accessibility in microRNA target prediction (Q42152663)

17 October 2017

Efficient use of accessibility in microRNA target prediction (English)

1 reference

17 October 2017

1 reference

Ray M Marín

1

1 reference

PMCID

3017612

17 October 2017

Jirí Vanícek

series ordinal

2

1 reference

17 October 2017

30 August 2010

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17 October 2017

Nucleic Acids Research

1 reference

17 October 2017

39

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17 October 2017

1

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17 October 2017

19-29

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Creative Commons Attribution-NonCommercial 2.5 Generic

17 October 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Accurate microRNA target prediction correlates with protein repression levels

29 May 2018

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Current tools for the identification of miRNA genes and their targets.

29 May 2018

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MicroRNAs: target recognition and regulatory functions

29 May 2018

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mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts

29 May 2018

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A three-dimensional view of the molecular machinery of RNA interference

29 May 2018

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Tandem array-based expression screens identify host mRNA targets of virus-encoded microRNAs

29 May 2018

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29 May 2018

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miRecords: an integrated resource for microRNA-target interactions

29 May 2018

1 reference

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IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

29 May 2018

1 reference

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Widespread changes in protein synthesis induced by microRNAs

29 May 2018

1 reference

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

29 May 2018

1 reference

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Suppression of immediate-early viral gene expression by herpesvirus-coded microRNAs: implications for latency

29 May 2018

1 reference

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Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

29 May 2018

1 reference

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The role of site accessibility in microRNA target recognition

29 May 2018

1 reference

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

29 May 2018

1 reference

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Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2

29 May 2018

1 reference

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Inference of miRNA targets using evolutionary conservation and pathway analysis

29 May 2018

1 reference

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Thermodynamics of RNA-RNA binding

29 May 2018

1 reference

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miRBase: microRNA sequences, targets and gene nomenclature

29 May 2018

1 reference

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Revealing posttranscriptional regulatory elements through network-level conservation

29 May 2018

1 reference

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Human microRNAs target a functionally distinct population of genes with AT-rich 3' UTRs

29 May 2018

1 reference

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Combinatorial microRNA target predictions

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Incorporating structure to predict microRNA targets

29 May 2018

1 reference

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Principles of microRNA-target recognition

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Fast and effective prediction of microRNA/target duplexes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Predicting and validating microRNA targets

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

MicroRNA targets in Drosophila

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Prediction of mammalian microRNA targets

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Identification of Drosophila MicroRNA targets

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

The UCSC Table Browser data retrieval tool

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

The impact of target site accessibility on the design of effective siRNAs

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

RNAplex: a fast tool for RNA-RNA interaction search

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Potent effect of target structure on microRNA function.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Local RNA base pairing probabilities in large sequences.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Target site effects in the RNA interference and microRNA pathways

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017612

Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20805242

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ768

1 reference

17 October 2017

journals/nar/MarinV11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 October 2017

1 reference

PMCID

3017612