Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss (Q41873173)

13 October 2017

Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss (English)

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13 October 2017

4

Karolin Luger

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author name string

Maxim Y Sheinin

1

1 reference

13 October 2017

Ming Li

2

1 reference

13 October 2017

Mohammad Soltani

3

1 reference

13 October 2017

Michelle D Wang

5

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13 October 2017

language of work or name

English

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publication date

1 January 2013

1 reference

13 October 2017

Nature Communications

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13 October 2017

4

1 reference

13 October 2017

2579

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https://scigraph.springernature.com/pub.10.1038/ncomms3579

13 October 2017

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The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes.

5 June 2018

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Histone fold modifications control nucleosome unwrapping and disassembly

5 June 2018

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Determinants and dynamics of genome accessibility

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Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes

5 June 2018

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Nucleosome structure(s) and stability: variations on a theme

5 June 2018

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Tension-dependent structural deformation alters single-molecule transition kinetics

5 June 2018

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RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones

5 June 2018

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Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

5 June 2018

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Histones: annotating chromatin

5 June 2018

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Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

5 June 2018

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Hidden Markov analysis of nucleosome unwrapping under force

5 June 2018

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Forces and torques in the nucleus: chromatin under mechanical constraints

5 June 2018

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High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

5 June 2018

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Nucleosome hopping and sliding kinetics determined from dynamics of single chromatin fibers in Xenopus egg extracts

5 June 2018

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Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection

5 June 2018

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The role of chromatin during transcription

5 June 2018

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Effect of force on mononucleosomal dynamics

5 June 2018

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Structural plasticity of single chromatin fibers revealed by torsional manipulation

5 June 2018

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Rapid spontaneous accessibility of nucleosomal DNA.

5 June 2018

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Nucleosome conformational flexibility and implications for chromatin dynamics.

5 June 2018

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Nucleosomes facilitate their own invasion

5 June 2018

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Reconstitution of nucleosome core particles from recombinant histones and DNA.

5 June 2018

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The structure of DNA in the nucleosome core

5 June 2018

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Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

5 June 2018

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Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

5 June 2018

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Nucleosome dynamics. III. Histone tail-dependent fluctuation of nucleosomes between open and closed DNA conformations. Implications for chromatin dynamics and the linking number paradox. A relaxation study of mononucleosomes on DNA minicircles.

5 June 2018

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Torsional directed walks, entropic elasticity, and DNA twist stiffness

5 June 2018

1 reference

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Crystal structure of the nucleosome core particle at 2.8 A resolution

5 June 2018

1 reference

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Interaction of the histone (H3-H4)2 tetramer of the nucleosome with positively supercoiled DNA minicircles: Potential flipping of the protein from a left- to a right-handed superhelical form

5 June 2018

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Supercoiling of the DNA template during transcription

5 June 2018

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In vitro evidence that transcription-induced stress causes nucleosome dissolution and regeneration

5 June 2018

1 reference

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Formation of nucleosomes on positively supercoiled DNA

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Folding of the DNA double helix in chromatin-like structures from simian virus 40

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

The functional response of upstream DNA to dynamic supercoiling in vivo

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Torque and dynamics of linking number relaxation in stretched supercoiled DNA.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Histone release during transcription: displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Optical torque wrench: angular trapping, rotation, and torque detection of quartz microparticles.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Force and velocity measured for single molecules of RNA polymerase.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848035

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

18 August 2018

1 reference

12 December 2020

Nucleosome chiral transition under positive torsional stress in single chromatin fibers

1 reference

12 December 2020

Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells

1 reference

12 December 2020

Studies on rates of nucleosome formation with DNA under stress

1 reference

12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS3579

1 reference

13 October 2017

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1 reference

13 October 2017

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