Comparison of tRNA motions in the free and ribosomal bound structures (Q41813945)

12 October 2017

Comparison of tRNA motions in the free and ribosomal bound structures (English)

1 reference

12 October 2017

2

Robert L Jernigan

1 reference

12 October 2017

Yongmei Wang

1

1 reference

PMC publication ID

1366836

12 October 2017

language of work or name

English

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publication date

19 August 2005

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12 October 2017

11

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inferred from page(s)

published in

Biophysical Journal

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12 October 2017

89

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12 October 2017

5

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12 October 2017

3399-3409

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Molecular mechanism of domain swapping in proteins: an analysis of slower motions

12 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

A comparative study of motor-protein motions by using a simple elastic-network model

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Substructure synthesis method for simulating large molecular complexes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Dynamics of proteins in crystals: comparison of experiment with simple models

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Relating molecular flexibility to function: a case study of tubulin

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Conformational change of proteins arising from normal mode calculations

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Crystal structure of the ribosome at 5.5 A resolution

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Anisotropy of fluctuation dynamics of proteins with an elastic network model

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

A ratchet-like inter-subunit reorganization of the ribosome during translocation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Proteins with similar architecture exhibit similar large-scale dynamic behavior

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

X-ray crystal structures of 70S ribosome functional complexes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Cooperative fluctuations and subunit communication in tryptophan synthase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

EF-G-catalyzed translocation of anticodon stem-loop analogs of transfer RNA in the ribosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Global ribosome motions revealed with elastic network model

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Universally conserved interactions between the ribosome and the anticodon stem-loop of A site tRNA important for translocation

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Molecular mechanisms of chaperonin GroEL-GroES function

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Dynamical structure of transfer RNA studied by normal mode analysis.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Analysis of domain motions by approximate normal mode calculations.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366836

Analysis of domain motions in large proteins

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16113113

12 December 2020

inferred from PubMed ID database lookup

Mega-Dalton Biomolecular Motion Captured from Electron Microscopy Reconstructions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16113113

12 December 2020

inferred from PubMed ID database lookup

Structural rules and conformational compensations in the tRNA L-form

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16113113

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1529/BIOPHYSJ.105.064840

1 reference

12 October 2017

1 reference

PMC publication ID

1366836

12 October 2017

PubMed publication ID

16113113

1 reference

PMC publication ID

1366836