Anisotropy of fluctuation dynamics of proteins with an elastic network model (Q33931550)

30 July 2017

Anisotropy of fluctuation dynamics of proteins with an elastic network model (English)

1 reference

30 July 2017

5

Keskin O

1 reference

ORCID Public Data File 2021

30 July 2017

1 reference

author name string

Atilgan AR

1

1 reference

30 July 2017

Durell SR

2

1 reference

30 July 2017

Jernigan RL

3

1 reference

30 July 2017

Demirel MC

4

1 reference

30 July 2017

Bahar I

6

1 reference

30 July 2017

language of work or name

English

0 references

publication date

1 January 2001

1 reference

30 July 2017

11

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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30 July 2017

80

1 reference

30 July 2017

1

1 reference

30 July 2017

505-515

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How soft is a protein? A protein dynamics force constant measured by neutron scattering.

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Proteins with similar architecture exhibit similar large-scale dynamic behavior

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Structure-based analysis of protein dynamics: comparison of theoretical results for hen lysozyme with X-ray diffraction and NMR relaxation data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Investigating protein dynamics in collective coordinate space

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Cooperative fluctuations and subunit communication in tryptophan synthase.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

The structure of human retinol-binding protein (RBP) with its carrier protein transthyretin reveals an interaction with the carboxy terminus of RBP

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Identification of kinetically hot residues in proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Structure of pig plasma retinol-binding protein at 1.65 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Dynamics and function of proteins: the search for general concepts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Protein dynamics derived from clusters of crystal structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Mechanical property of a TIM-barrel protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Engineering protein mechanics: inhibition of concerted motions of the cellular retinol binding protein by site-directed mutagenesis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Simulations of CRP:(cAMP)2 in noncrystalline environments show a subunit transition from the open to the closed conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Essential dynamics of proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

SCOP: a structural classification of proteins database for the investigation of sequences and structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Dynamics of a small globular protein in terms of low-frequency vibrational modes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

The Energy Landscapes and Motions of Proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Analysis of domain motions by approximate normal mode calculations.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301252

Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability

29 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Functional concerted motions in the bovine serum retinol-binding protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Proteins can adopt totally different folded conformations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Low-frequency modes in proteins: Use of the effective-medium approximation to interpret the fractal dimension observed in electron-spin relaxation measurements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Statistical Thermodynamics of Random Networks [and Discussion]

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Large-amplitude nonlinear motions in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Gaussian Dynamics of Folded Proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Harmonicity and anharmonicity in protein dynamics: a normal mode analysis and principal component analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Analysis of domain motions in large proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Anisotropy and anharmonicity of atomic fluctuations in proteins: analysis of a molecular dynamics simulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Effect of anisotropy and anharmonicity on protein crystallographic refinement. An evaluation by molecular dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

Crystals of haemoglobin with the T quaternary structure bind oxygen noncooperatively with no Bohr effect

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976033-X

10.1016/S0006-3495(01)76033-X

7 January 2021

Identifiers

DOI

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release_4vwgmmnko5aovjmxaoeht4qdu4

30 July 2017

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Fatcat

https://api.fatcat.wiki/v0/release/4vwgmmnko5aovjmxaoeht4qdu4

mapped directly with Wikidata item

24 November 2022

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PMCID

1301252

1 reference

30 July 2017

1 reference