Feed in summer, rest in winter: microbial carbon utilization in forest topsoil (Q41708004)

7 October 2017

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil (English)

1 reference

7 October 2017

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4

Bernard Henrissat

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7 October 2017

6

Petr Baldrian

1 reference

7 October 2017

5

Adina Howe

1 reference

7 October 2017

3

Vincent Lombard

1 reference

7 October 2017

Lucia Žifčáková

1

1 reference

7 October 2017

Tomáš Větrovský

series ordinal

2

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7 October 2017

18 September 2017

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7 October 2017

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7 October 2017

5

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7 October 2017

1

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7 October 2017

122

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https://scigraph.springernature.com/pub.10.1186/s40168-017-0340-0

7 October 2017

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cites work

Forest microbiome: diversity, complexity and dynamics.

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Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils

6 June 2018

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Identification of microbial populations driving biopolymer degradation in acidic peatlands by metatranscriptomic analysis.

6 June 2018

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Vertical and seasonal dynamics of fungal communities in boreal Scots pine forest soil

6 June 2018

1 reference

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Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Temporal variation of Bistorta vivipara-associated ectomycorrhizal fungal communities in the High Arctic

6 June 2018

1 reference

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Revisiting the 'Gadgil effect': do interguild fungal interactions control carbon cycling in forest soils?

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

6 June 2018

1 reference

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Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Microbial community composition shapes enzyme patterns in topsoil and subsoil horizons along a latitudinal transect in Western Siberia

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Genomic potential for polysaccharide deconstruction in bacteria

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Ectomycorrhizal fungi - potential organic matter decomposers, yet not saprotrophs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Trimmomatic: a flexible trimmer for Illumina sequence data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Comparison of seasonal soil microbial process in snow-covered temperate ecosystems of northern China

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Tackling soil diversity with the assembly of large, complex metagenomes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

The carbohydrate-active enzymes database (CAZy) in 2013

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Seasonal dynamics of fungal communities in a temperate oak forest soil.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

CD-HIT: accelerated for clustering the next-generation sequencing data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Identification of cellulose-responsive bacterial and fungal communities in geographically and edaphically different soils by using stable isotope probing.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Metatranscriptomics reveals the diversity of genes expressed by eukaryotes in forest soils

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Quantification of effects of season and nitrogen supply on tree below-ground carbon transfer to ectomycorrhizal fungi and other soil organisms in a boreal pine forest

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Regulation of glycogen metabolism in yeast and bacteria

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Fungal carbohydrate support in the ectomycorrhizal symbiosis: a review.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Class I alpha-mannosidases are required for N-glycan processing and root development in Arabidopsis thaliana

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Differential utilization of carbon substrates by bacteria and fungi in tundra soil

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Mastering ectomycorrhizal symbiosis: the impact of carbohydrates

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Relationships between temperature responses and bacterial community structure along seasonal and altitudinal gradients

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Minimus: a fast, lightweight genome assembler

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Bacterial and fungal community structure in Arctic tundra tussock and shrub soils

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Seasonal dynamics of microbial community composition and function in oak canopy and open grassland soils.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

The diversity and biogeography of soil bacterial communities

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Gene structure and molecular analysis of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Ammonia-oxidizing bacteria respond to multifactorial global change

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Stratification and seasonal stability of diverse bacterial communities in a Pinus merkusii (pine) forest soil in central Java, Indonesia.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Fundamentally different logic of gene regulation in eukaryotes and prokaryotes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

diArk--the database for eukaryotic genome and transcriptome assemblies in 2014.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Influence of temperature and soil water content on bacterial, archaeal and denitrifying microbial communities in drained fen grassland soil microcosms.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Interactions between soil and tree roots accelerate long-term soil carbon decomposition

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604414

Global soil carbon: understanding and managing the largest terrestrial carbon pool

30 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-017-0340-0

Estimation of the biomass and seasonal growth of external mycelium of ectomycorrhizal fungi in the field

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-017-0340-0

Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-017-0340-0

Priming effects: Interactions between living and dead organic matter

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-017-0340-0

Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-017-0340-0

Areal activities and stratification of hydrolytic enzymes involved in the biochemical cycles of carbon, nitrogen, sulphur and phosphorus in podsolized boreal forest soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-017-0340-0

CARBON AND ENERGY STORAGE IN BACTERIA

21 January 2018

1 reference

12 December 2020

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

1 reference

12 December 2020

Laccase from Sycamore Maple (Acer pseudoplatanus) Polymerizes Monolignols

1 reference

12 December 2020

Beech carbon productivity as driver of ectomycorrhizal abundance and diversity

1 reference

12 December 2020

Dead fungal mycelium in forest soil represents a decomposition hotspot and a habitat for a specific microbial community

1 reference

12 December 2020

10.1186/S40168-017-0340-0

Identifiers

DOI

1 reference

Dimensions Publication ID

7 October 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s40168-017-0340-0

1 reference

7 October 2017

1 reference