ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards. (Q35314189)

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20 February 2020

title

ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards (English)

1 reference

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20 February 2020

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1

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20 February 2020

Simon Perkins

3

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20 February 2020

Dong Xia

5

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20 February 2020

Andrew Jones

7

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20 February 2020

author name string

Ritesh Krishna

2

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20 February 2020

Andrew Collins

4

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20 February 2020

Jonathan Wastling

6

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20 February 2020

publication date

19 November 2014

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20 February 2020

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20 February 2020

volume

14

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20 February 2020

issue

23-24

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20 February 2020

page(s)

2731-2741

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A beginner's guide to eukaryotic genome annotation

20 February 2020

cites work

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Open source system for analyzing, validating, and storing protein identification data

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Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

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Peppy: proteogenomic search software

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Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: validation of genes and alternative mRNA splicing

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

21 January 2018

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iPiG: integrating peptide spectrum matches into genome browser visualizations

21 January 2018

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Template proteogenomics: sequencing whole proteins using an imperfect database

21 January 2018

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InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

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An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays

21 January 2018

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The mzIdentML data standard for mass spectrometry-based proteomics results

21 January 2018

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Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML

21 January 2018

1 reference

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

21 January 2018

1 reference

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

21 January 2018

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SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

21 January 2018

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Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines

21 January 2018

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The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

21 January 2018

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ToxoDB: accessing the Toxoplasma gondii genome

21 January 2018

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Gene prediction with a hidden Markov model and a new intron submodel

21 January 2018

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Improved microbial gene identification with GLIMMER

21 January 2018

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In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR).

21 January 2018

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21 January 2018

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