A novel intronic cis element, ISE/ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence. (Q40480374)

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English	A novel intronic cis element, ISE/ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence.	scientific article

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scholarly article

1 reference

Europe PubMed Central

20 September 2017

A novel intronic cis element, ISE/ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence. (English)

1 reference

Europe PubMed Central

20 September 2017

author name string

Ruben H Hovhannisyan

1

1 reference

Europe PubMed Central

20 September 2017

Russ P Carstens

2

1 reference

Europe PubMed Central

20 September 2017

language of work or name

0 references

publication date

1 January 2005

1 reference

Europe PubMed Central

20 September 2017

Molecular and Cellular Biology

1 reference

Europe PubMed Central

20 September 2017

25

1 reference

Europe PubMed Central

20 September 2017

1

1 reference

Europe PubMed Central

20 September 2017

250-263

1 reference

Europe PubMed Central

20 September 2017

Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes

1 reference

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22 September 2017

A stem structure in fibroblast growth factor receptor 2 transcripts mediates cell-type-specific splicing by approximating intronic control elements

1 reference

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22 September 2017

CLIP identifies Nova-regulated RNA networks in the brain

1 reference

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22 September 2017

Mechanisms of alternative pre-messenger RNA splicing

1 reference

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22 September 2017

RNAi-mediated PTB depletion leads to enhanced exon definition

1 reference

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22 September 2017

Splicing regulation at the second catalytic step by Sex-lethal involves 3' splice site recognition by SPF45

1 reference

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22 September 2017

The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element.

1 reference

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22 September 2017

Recognition of RNA branch point sequences by the KH domain of splicing factor 1 (mammalian branch point binding protein) in a splicing factor complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing

1 reference

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22 September 2017

Identification of an RNA binding specificity for the potential splicing factor TLS

1 reference

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22 September 2017

The CUG-binding protein binds specifically to UG dinucleotide repeats in a yeast three-hybrid system

1 reference

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22 September 2017

An intronic splicing silencer causes skipping of the IIIb exon of fibroblast growth factor receptor 2 through involvement of polypyrimidine tract binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site

1 reference

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22 September 2017

Alternative pre-mRNA splicing: the logic of combinatorial control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Characterization of human RNA splice signals by iterative functional selection of splice sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Conservation of functional domains involved in RNA binding and protein-protein interactions in human and Saccharomyces cerevisiae pre-mRNA splicing factor SF1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

An intronic sequence element mediates both activation and repression of rat fibroblast growth factor receptor 2 pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Multiple interdependent sequence elements control splicing of a fibroblast growth factor receptor 2 alternative exon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

The branchpoint residue is recognized during commitment complex formation before being bulged out of the U2 snRNA-pre-mRNA duplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

The herpes simplex virus type 1 2.0-kilobase latency-associated transcript is a stable intron which branches at a guanosine

1 reference

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22 September 2017

Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Muscle-specific splicing enhancers regulate inclusion of the cardiac troponin T alternative exon in embryonic skeletal muscle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Selection of the bovine papillomavirus type 1 nucleotide 3225 3' splice site is regulated through an exonic splicing enhancer and its juxtaposed exonic splicing suppressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Three recognition events at the branch-site adenine.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Control of calcitonin/calcitonin gene-related peptide pre-mRNA processing by constitutive intron and exon elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Exon recognition in vertebrate splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

The tat/rev intron of human immunodeficiency virus type 1 is inefficiently spliced because of suboptimal signals in the 3' splice site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Polyadenylylated nuclear RNA contains branches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Intron splicing: a conserved internal signal in introns of animal pre-mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Unusual branch point selection involved in splicing of the alternatively processed Calcitonin/CGRP-I pre-mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Unusual branch point selection in processing of human growth hormone pre-mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

UACUAAC is the preferred branch site for mammalian mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Uridine branch acceptor is a cis-acting element involved in regulation of the alternative processing of calcitonin/CGRP-l pre-mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Validation of anin vitroRNA processing system for CT/CGRP precursor mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

22 September 2017

Polypyrimidine tract-binding protein represses splicing of a fibroblast growth factor receptor-2 gene alternative exon through exon sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

25 September 2017

Region-specific alternative splicing in the nervous system: implications for regulation by the RNA-binding protein NAPOR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

17 June 2018

An important role for the IIIb isoform of fibroblast growth factor receptor 2 (FGFR2) in mesenchymal-epithelial signalling during mouse organogenesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

17 June 2018

Functional crosstalk between exon enhancers, polypyrimidine tracts and branchpoint sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

17 June 2018

A compensatory base change in human U2 snRNA can suppress a branch site mutation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

17 June 2018

In vitro formation of a lariat structure containing a G2'-5'G linkage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

17 June 2018

Ser/Arg-rich protein-mediated communication between U1 and U2 small nuclear ribonucleoprotein particles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

20 August 2018

Suppression of multiple substrate mutations by spliceosomal prp8 alleles suggests functional correlations with ribosomal ambiguity mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

20 August 2018

A Non-sequence-specific double-stranded RNA structural element regulates splicing of two mutually exclusive exons of fibroblast growth factor receptor 2 (FGFR2).

1 reference

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20 August 2018

Regulation of alternative splicing of alpha-actinin transcript by Bruno-like proteins

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20 August 2018

An alternative-exon database and its statistical analysis.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=538792

20 August 2018

The role of the mammalian branchpoint sequence in pre-mRNA splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing of SV40 early pre-mRNA is determined by branch site selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian pre-mRNA branch site selection by U2 snRNP involves base pairing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian U2 snRNP has a sequence-specific RNA-binding activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA lariat debranching enzyme as tool for analyzing RNA structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of branchpoint and 3'-exon sequences in the control of balanced splicing of avian retrovirus RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the effects of mutations in the putative branchpoint sequence of intron 4 on the splicing within the human lecithin:cholesterol acyltransferase gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of mutations at the lariat branch acceptor site on beta-globin pre-mRNA splicing in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/15601847

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MCB.25.1.250-263.2005

1 reference

Europe PubMed Central

20 September 2017

1 reference

Europe PubMed Central

20 September 2017

1 reference

Europe PubMed Central

20 September 2017

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