Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs (Q40420544)

20 September 2017

Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs (English)

1 reference

20 September 2017

0 references

5

William Stafford Noble

1 reference

20 September 2017

4

David R Goodlett

1 reference

20 September 2017

Sean McIlwain

1

1 reference

PMCID

2866041

20 September 2017

Paul Draghicescu

series ordinal

2

1 reference

PMCID

2866041

20 September 2017

Pragya Singh

series ordinal

3

1 reference

20 September 2017

1 May 2010

1 reference

Journal of Proteome Research

20 September 2017

1 reference

20 September 2017

9

1 reference

20 September 2017

5

1 reference

20 September 2017

2488-2495

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Direct maximization of protein identifications from tandem mass spectra

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Characterization of protein cross-links via mass spectrometry and an open-modification search strategy.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Identification of cross-linked peptides from large sequence databases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

CLPM: a cross-linked peptide mapping algorithm for mass spectrometric analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Popitam: towards new heuristic strategies to improve protein identification from tandem mass spectrometry data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Probability-based protein identification by searching sequence databases using mass spectrometry data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Statistical calibration of the SEQUEST XCorr function

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

A fast SEQUEST cross correlation algorithm

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Rapid and accurate peptide identification from tandem mass spectra

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Shotgun cross-linking analysis for studying quaternary and tertiary protein structures

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866041

Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20349954

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR901163D

1 reference

20 September 2017

1 reference

20 September 2017

1 reference

PMCID

2866041