Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides (Q33597998)

28 July 2017

Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides (English)

1 reference

28 July 2017

1 reference

Robert J Chalkley

4

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Alma L Burlingame

series ordinal

3

object named as

Alma L Burlingame

1 reference

28 July 2017

2

Peter R Baker

1 reference

28 July 2017

Feixia Chu

1

1 reference

28 July 2017

6 October 2009

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Molecular & Cellular Proteomics

28 July 2017

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28 July 2017

9

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28 July 2017

1

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28 July 2017

25-31

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Characterization of protein cross-links via mass spectrometry and an open-modification search strategy.

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

In-depth analysis of tandem mass spectrometry data from disparate instrument types

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Identification of cross-linked peptides from large sequence databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Proteome survey reveals modularity of the yeast cell machinery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Targeting proteins to membranes: structure of the signal recognition particle.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

A modular cross-linking approach for exploring protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Intramolecular cross-linking experiments on cytochrome c and ribonuclease A using an isotope multiplet method.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Novel inter-protein cross-link identified in the GGH-ecotin D137Y dimer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Mapping protein interfaces with a fluorogenic cross-linker and mass spectrometry: application to nebulin-calmodulin complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Mapping of contact sites in complex formation between light-activated rhodopsin and transducin by covalent crosslinking: use of a chemically preactivated reagent

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Mapping of contact sites in complex formation between transducin and light-activated rhodopsin by covalent crosslinking: use of a photoactivatable reagent

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

A new crosslinker for mass spectrometric analysis of the quaternary structure of protein complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Chemical cross-linking with thiol-cleavable reagents combined with differential mass spectrometric peptide mapping--a novel approach to assess intermolecular protein contacts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808265

Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis

21 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800555-MCP200

Mass spectrometric detection of affinity purified crosslinked peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800555-MCP200

Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800555-MCP200

Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800555-MCP200

Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19809093

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M800555-MCP200

1 reference

28 July 2017

1 reference

28 July 2017

1 reference

PubMed ID

19809093