Phylogenetic analysis of the human antibody repertoire reveals quantitative signatures of immune senescence and aging (Q40368519)

19 September 2017

Phylogenetic analysis of the human antibody repertoire reveals quantitative signatures of immune senescence and aging (English)

1 reference

19 September 2017

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6

Stephen R Quake

1 reference

19 September 2017

4

Cornelia L Dekker

1 reference

19 September 2017

Charles F A de Bourcy

1

1 reference

19 September 2017

Cesar J Lopez Angel

2

1 reference

19 September 2017

Christopher Vollmers

3

1 reference

19 September 2017

Mark M Davis

5

1 reference

19 September 2017

language of work or name

English

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publication date

17 January 2017

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Proceedings of the National Academy of Sciences of the United States of America

19 September 2017

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19 September 2017

114

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19 September 2017

5

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19 September 2017

1105-1110

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Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Cytomegalovirus infection enhances the immune response to influenza.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Aging-dependent alterations in gene expression and a mitochondrial signature of responsiveness to human influenza vaccination.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

B-cell repertoire responses to varicella-zoster vaccination in human identical twins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

The promise and challenge of high-throughput sequencing of the antibody repertoire.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Effects of aging, cytomegalovirus infection, and EBV infection on human B cell repertoires

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

High-resolution temporal response patterns to influenza vaccine reveal a distinct human plasma cell gene signature

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Genetic measurement of memory B-cell recall using antibody repertoire sequencing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Sex, gender and immunosenescence: a key to understand the different lifespan between men and women?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Lineage structure of the human antibody repertoire in response to influenza vaccination

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Snakemake--a scalable bioinformatics workflow engine

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Associating microbiome composition with environmental covariates using generalized UniFrac distances

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Extrapolation of urn models via poissonization: accurate measurements of the microbial unknown.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

phangorn: phylogenetic analysis in R

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Role of CMV in immune senescence

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

QIIME allows analysis of high-throughput community sequencing data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Age-associated decrease in TLR function in primary human dendritic cells predicts influenza vaccine response

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Evidence of premature immune aging in patients thymectomized during early childhood

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Immunosenescence and influenza vaccine efficacy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

B-cell diversity decreases in old age and is correlated with poor health status

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

The convergence of carbohydrate active gene repertoires in human gut microbes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Mature B cells class switched to IgD are autoreactive in healthy individuals

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

The riddle of the dual expression of IgM and IgD

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

UniFrac: a new phylogenetic method for comparing microbial communities

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Antibody response to influenza vaccination in the elderly: a quantitative review

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Integration of microbial ecology and statistics: a test to compare gene libraries

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

APE: Analyses of Phylogenetics and Evolution in R language

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Phylogenetic approaches for describing and comparing the diversity of microbial communities

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Counting the uncountable: statistical approaches to estimating microbial diversity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Epidemiology and unique aspects of aging and infectious diseases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Memory B cells at successive stages of differentiation. Affinity maturation and the role of IgD receptors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Molecular analysis of IgD-positive human germinal centres.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Regulation of aged humoral immune defense against pneumococcal bacteria by IgM memory B cell.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

Diversity in the CDR3 region of V(H) is sufficient for most antibody specificities

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5293037

The aging of the immune system

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1617959114

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1617959114

The efficacy of influenza vaccination in elderly individuals. A randomized double-blind placebo-controlled trial

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28096374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Role of tonsillar IgD+CD27+ memory B cells in humoral immunity against pneumococcal infection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28096374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The stringdist Package for Approximate String Matching

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.32614/RJ-2014-011

2 January 2022

Identifiers

DOI

10.1073/PNAS.1617959114

1 reference

19 September 2017

1 reference

19 September 2017

PubMed publication ID

28096374

1 reference